Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_C04
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 40 0.002
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 40 0.002
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 30 1.9
U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL132865-21|CAJ76952.1| 133|Caenorhabditis elegans Hypothetical... 29 5.7
AL132865-20|CAB60594.2| 175|Caenorhabditis elegans Hypothetical... 29 5.7
Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z32682-6|CAA83614.1| 200|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 627 PAAPCLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSVP- 803
P+ L L+++ N + PC+ GC + +HEE C+F CP C
Sbjct: 129 PSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEELCEFRPYCCPCPGASCKWQG 188
Query: 804 -FEELSSHLQXTHNII 848
++ HL+ H I
Sbjct: 189 GLSDVMEHLKKIHKSI 204
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 627 PAAPCLALQRLVNDLMLPCRNYRRGCTELLTAITRVKHEEECKFDTMMCPITANCCSVP- 803
P+ L L+++ N + PC+ GC + +HEE C+F CP C
Sbjct: 195 PSVRNLGLEKIANTVRFPCKFSTSGCPLNFHHADKTEHEELCEFRPYCCPCPGASCKWQG 254
Query: 804 -FEELSSHLQXTHNII 848
++ HL+ H I
Sbjct: 255 GLSDVMEHLKKIHKSI 270
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +3
Query: 45 TTSQDSDRPTQAHVSN*ALYNCELFHNKMTVPHL*CKCMCLHKTCSQVND 194
TT Q R + S+ A NCE F K V + CKC K C D
Sbjct: 242 TTCQRRFRDNKGFQSHVASQNCEFFDRKFFVQVIACKCGHQFKYCYYQRD 291
>U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical
protein F42C5.4 protein.
Length = 712
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 447 AQCTCPNCDELLSRFSECSICLEPL 521
+ C C + +F+EC IC EPL
Sbjct: 52 SSCNHSLCSQCFDKFTECPICKEPL 76
>AL132865-21|CAJ76952.1| 133|Caenorhabditis elegans Hypothetical
protein Y62E10A.5b protein.
Length = 133
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -1
Query: 273 PSQSGTVLVFSETLSTKILH*TPKQNN-HSLENTFYVNTYTCITN---GELSFYYEITRS 106
P+QS ++ TL + I K N H + F + Y+ I GE Y +I R
Sbjct: 18 PTQSSGIVQALNTLDSTI-----KVNAVHKGDTAFGMQVYSAIQKIPKGETRSYSDIARE 72
Query: 105 CTRLSSIRALASVC 64
S++RA+AS C
Sbjct: 73 IGNPSAVRAVASAC 86
>AL132865-20|CAB60594.2| 175|Caenorhabditis elegans Hypothetical
protein Y62E10A.5a protein.
Length = 175
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -1
Query: 273 PSQSGTVLVFSETLSTKILH*TPKQNN-HSLENTFYVNTYTCITN---GELSFYYEITRS 106
P+QS ++ TL + I K N H + F + Y+ I GE Y +I R
Sbjct: 60 PTQSSGIVQALNTLDSTI-----KVNAVHKGDTAFGMQVYSAIQKIPKGETRSYSDIARE 114
Query: 105 CTRLSSIRALASVC 64
S++RA+AS C
Sbjct: 115 IGNPSAVRAVASAC 128
>Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 233 NVSENTRTVPLCDGEEISEQ*LWREQRHDSNRKEN*RRRLRFVQWR 370
NV TR + +C G++I E Q+ D KEN R + + ++
Sbjct: 83 NVLPETRRLIICSGQKIDENFFSFTQKEDQQIKENWERLAKQLNYK 128
>Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 233 NVSENTRTVPLCDGEEISEQ*LWREQRHDSNRKEN*RRRLRFVQWR 370
NV TR + +C G++I E Q+ D KEN R + + ++
Sbjct: 83 NVLPETRRLIICSGQKIDENFFSFTQKEDQQIKENWERLAKQLNYK 128
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 704 HRTTDSNHKSQTRRRMQV*YDDVSHHRQLLLGSIRRTLQSPSXHAQHH 847
H +HK Q Q + VS H QL GS + T+QS H HH
Sbjct: 509 HLDQHHHHKHQDVVVEQTQFQKVSEHVQLG-GSRKSTIQSGHHHHHHH 555
>Z32682-6|CAA83614.1| 200|Caenorhabditis elegans Hypothetical
protein M04D8.6 protein.
Length = 200
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 48 TSQDSDRPTQAHVSN*ALYNCELFHNKMTVPHL*CKCMCL 167
TS D + H N L+N +LFH KMTV L C +
Sbjct: 114 TSTYEDCDPKRHACN-GLFNSDLFHTKMTVGLLAQGCFAI 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,403,794
Number of Sequences: 27780
Number of extensions: 371847
Number of successful extensions: 1014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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