Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_C04
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 335 FLFCYYRDAVLATIIVLRSLLRHRVEQSLYSRKHCQRKYFTEHRNKI 195
           F+F    + V+  ++ LRS L + ++ S+ SR +  R    E    I
Sbjct: 272 FVFAALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSI 318


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 423 VTSEEGHAAQCTCPNCDEL 479
           ++S    A+ C+C +CDE+
Sbjct: 316 ISSTPSQASSCSCLDCDEI 334


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 269 HRVEQSLYSRKHCQRKYFTEHRNKIIIHL 183
           +R E+ LYS K    +Y+ E  +  + HL
Sbjct: 254 YRGEEYLYSHKLLLNRYYLERLSNDLPHL 282


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 394 VLSSISTFSPLDESEPSSS 338
           V +S++   P DE+EPSS+
Sbjct: 262 VTNSVTCDRPSDEAEPSST 280


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -1

Query: 237 TLSTKILH*TPKQNNHSLENTFYVNTYTCITNGELSFYYEITRSCTRLSSI 85
           +LS K +H     NN++  N  Y N Y    N   + Y ++  +   +  I
Sbjct: 317 SLSNKTIH-----NNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQI 362


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 396 LPIVGPPALVTSEEGHAAQCTCPNCDELLS 485
           L +  PPA   S +  A+Q  CP    LLS
Sbjct: 673 LHLTSPPARSPSSQAQASQ--CPQTASLLS 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,965
Number of Sequences: 438
Number of extensions: 4474
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)