Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B24
         (969 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.8  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    31   1.8  
04_01_0253 - 3358090-3359052                                           29   4.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.7  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 523 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 681
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +3

Query: 633 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCV-HEP-- 797
           P S+ + +PVPTLP++   + F   G    S H +  R Y        S  G V HEP  
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341

Query: 798 PFSPTAAP-YP 827
           P  P AAP YP
Sbjct: 342 PSYPPAAPSYP 352


>04_01_0253 - 3358090-3359052
          Length = 320

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -3

Query: 844 TQTIVTG*GA-AVGLNGGSCTQPSLERTTYTELRYLQREL*ESATLPEGRKADRYPVSGR 668
           T T  TG G  A+   GGSCT+    RTT    R  +R    ++   +G         G 
Sbjct: 33  TTTTTTGAGEEAMRAAGGSCTETGTTRTTPLRCRRRRRRRETTSRATDGTMTTTTNTGGV 92

Query: 667 VGTGERTRELP 635
              G R R  P
Sbjct: 93  RSKGRRGRGRP 103


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 355 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 510
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 304 NESAN---ARGEAVCVLGALPLPRSLTRCAR 387
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,605,039
Number of Sequences: 37544
Number of extensions: 511332
Number of successful extensions: 1443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)