Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B21
         (1140 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     32   0.97 
12_02_0299 - 17051570-17052474,17053542-17053755                       26   3.7  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   3.9  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   5.2  
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983     29   5.2  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    25   7.2  
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129...    29   9.0  
09_02_0603 - 11150739-11150746,11150791-11151340                       29   9.0  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   9.0  

>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 31.9 bits (69), Expect = 0.97
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -1

Query: 510 PPXXXXXXXXXXKXFFXXPPPXGGKXXPPPXGEXXXPPP 394
           PP             +  PPP  G+  PPP G    PPP
Sbjct: 440 PPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQYAPPP 478


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 25.8 bits (54), Expect(2) = 3.7
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +2

Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
           PPPPPP                           PPPPPP
Sbjct: 289 PPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPP 327



 Score = 22.6 bits (46), Expect(2) = 3.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 692 PPPPPPXXF 718
           PPPPPP  F
Sbjct: 326 PPPPPPPSF 334


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 455 PPXXGGKXXPPPXGKXPXPPP 393
           PP  G    PPP G  P PPP
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPP 368


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 596 PPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
           PPPPP                       GG  PPPPPP
Sbjct: 273 PPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPP 310


>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
          Length = 448

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 394 GGGXGXFPXGGGXXFPPXXGG 456
           GGG G FP GGG  F    GG
Sbjct: 318 GGGDGGFPGGGGGGFSGGGGG 338


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 25.4 bits (53), Expect(2) = 7.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 683 GGXPPPPPP 709
           GG PPPPPP
Sbjct: 939 GGPPPPPPP 947



 Score = 21.8 bits (44), Expect(2) = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 581 KKXXPPPPPP 610
           K   PPPPPP
Sbjct: 937 KPGGPPPPPP 946


>12_01_0173 -
           1292164-1293036,1294063-1294098,1294195-1294334,
           1295592-1295748,1295862-1296035,1296146-1296396,
           1299446-1299590
          Length = 591

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +2

Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPP 706
           PPPPPP     +                  G  PPPPP
Sbjct: 483 PPPPPPLPLMPQFVQNTGGMFGMGPFGMVSGSAPPPPP 520


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 455 PPXXGGKXXPPPXGKXPXPPP 393
           PP  G    PPP  + P PPP
Sbjct: 64  PPPLGSFFVPPPQSRVPPPPP 84


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 394 GGGXGXFPXGGGXXFPPXXGG 456
           GGG G    GGG  +PP  GG
Sbjct: 99  GGGGGSSTGGGGIYYPPPTGG 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,595
Number of Sequences: 37544
Number of extensions: 357639
Number of successful extensions: 9248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5721
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3456450016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)