Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B21
(1140 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.38
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.38
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.38
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.38
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 8.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 8.1
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.38
Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = -2
Query: 515 PXXXXXXPXXXXXKXIFFXXPPXXGGKXXPPP-XGKXPXPPPXXXXXFFXGXXXXGPXKX 339
P P K FF PP G PPP G P PPP F G G
Sbjct: 47 PPSGILPPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPP-----MFAG----GIPPP 97
Query: 338 PXSPGGVXXXXXXXNXPPXP 279
P GG+ PP P
Sbjct: 98 PPMMGGIPPPPPMFGAPPPP 117
Score = 29.5 bits (63), Expect = 4.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 474 KXFFXXPPPXGGKXXPPPXGEXXXPPP 394
K F PPP PPP G PPP
Sbjct: 60 KPSFFIPPPVPNGFIPPPPGPGGIPPP 86
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.38
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
PPPPPP GG PPPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
PPPPPP GG PPPPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -2
Query: 455 PPXXGGKXXPPPX-GKXPXPPPXXXXXFFXGXXXXGPXKXPXSP 327
PP GG PPP G P PPP F G P +P
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGKXP----XPPPXXXXXFFXGXXXXGPXKXPXSPGG 321
PP GG PPP G P PPP GP P PGG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.38
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
PPPPPP GG PPPPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
PPPPPP GG PPPPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -2
Query: 455 PPXXGGKXXPPPX-GKXPXPPPXXXXXFFXGXXXXGPXKXPXSP 327
PP GG PPP G P PPP F G P +P
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGKXP----XPPPXXXXXFFXGXXXXGPXKXPXSPGG 321
PP GG PPP G P PPP GP P PGG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.38
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
PPPPPP GG PPPPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXGGGXPPPPPP 709
PPPPPP GG PPPPPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -2
Query: 455 PPXXGGKXXPPPX-GKXPXPPPXXXXXFFXGXXXXGPXKXPXSP 327
PP GG PPP G P PPP F G P +P
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGKXP----XPPPXXXXXFFXGXXXXGPXKXPXSPGG 321
PP GG PPP G P PPP GP P PGG
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP-PISGGPPPPPPPPGG 350
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -2
Query: 464 FXXPPXXGGKXXPP-PXGKXPXPPPXXXXXFFXGXXXXGPXKXPXSPG 324
F PP G PP P G P P F+ GP P PG
Sbjct: 200 FDCPPARSGPPGPPGPKGPRGTPGPTGPKNFYITSGPPGPPGPPGPPG 247
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGKXPXPPP 393
PP GG PP G P PPP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGKXPXPPP 393
PP GG PP G P PPP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGKXPXPPP 393
PP GG PP G P PPP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPP 308
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Frame = +1
Query: 325 PGXXGXFXGPXX---FXPXKKXXXXXGGGXGXFPXGGGXXFPPXXGG 456
PG G GP + P GGG G FP GGG GG
Sbjct: 295 PGGPGQDGGPGTDAAYCPCPPRTPAGGGGGGDFPAGGGGGGYSTGGG 341
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXG----GGXPPPPPP 709
PPPPPP G GG PPPPPP
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGK-----XPXPPPXXXXXFFXGXXXXGPXKXPXSP 327
PP GG PPP G P PPP G P P +P
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Frame = +2
Query: 593 PPPPPPXXXXKKXXXXXXXXXXXXXXXXXG----GGXPPPPPP 709
PPPPPP G GG PPPPPP
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Frame = -2
Query: 455 PPXXGGKXXPPPXGK-----XPXPPPXXXXXFFXGXXXXGPXKXPXSP 327
PP GG PPP G P PPP G P P +P
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,443,961
Number of Sequences: 27780
Number of extensions: 188687
Number of successful extensions: 3276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3088599568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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