Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B18
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.72
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.3
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 1.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.2
07_01_0479 + 3606663-3607448 30 2.9
12_02_1174 - 26696869-26698191 29 5.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 0.72
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXP 559
PPPP P P PG G PPPKG P G P
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/91 (27%), Positives = 27/91 (29%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPP PP K P PPPKG P G P P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPP--------PPPPKGPPPPPPAKGPPPPPPPKGPSP 364
Query: 587 QKRPKXXKKXRXVXFXPKXPPPPXGXSKKXP 679
P K PPPP G + + P
Sbjct: 365 PPPPPPGGKKGG-----PPPPPPKGGASRPP 390
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +2
Query: 458 PPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKXQKRPKXXKKXRXVXFXP 637
PP P P PPPK P G P P PK P
Sbjct: 314 PPPPPPKPA-AAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPS--------P 364
Query: 638 KXPPPPXGXSKKXPP 682
PPPP G PP
Sbjct: 365 PPPPPPGGKKGGPPP 379
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 409 PXPXXXGFXFWXPXPXPPXKTXGPXXXGXGXGXPXPQG 522
P P G P P PP P G G G P P G
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = +2
Query: 458 PPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKXQKRPKXXKKXRXVXFXP 637
P KP P G PP G PK G P K P + +PK K P
Sbjct: 163 PKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP----KP 218
Query: 638 KXPPP 652
K PP
Sbjct: 219 KPGPP 223
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/92 (27%), Positives = 34/92 (36%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPP +G PP + P F PPP P+ P P
Sbjct: 30 PPPP--QQPAYG---HMPPPQGAPPPFL-APPPPPPPGPPPPHQPQFNFGPG-----PPQ 78
Query: 587 QKRPKXXKKXRXVXFXPKXPPPPXGXSKKXPP 682
Q++P + + + P PPPP G + PP
Sbjct: 79 QQQPPPPPQ---MYYQPPPPPPPYGVNSSQPP 107
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Frame = +2
Query: 413 PPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKXQK 592
PP + PP P P F G PPP G P G P + P
Sbjct: 175 PPPMRPPQMPIPFQRPPGVP--PAFPGGP---PPPPGPFMRGPPPMGPPQVRPGMPGGPP 229
Query: 593 RPKXXKKXRXVXFXPKXPPPPXGXSK--KXPP 682
P F P PPPP G + + PP
Sbjct: 230 -PGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 5.1
Identities = 26/91 (28%), Positives = 29/91 (31%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPP R PP KP P PPP P P K P
Sbjct: 125 PPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPP-------PPPPRPPSVK--PPVV 175
Query: 587 QKRPKXXKKXRXVXFXPKXPPPPXGXSKKXP 679
Q +P+ + P PPP S K P
Sbjct: 176 QPKPQPPPSLQPP--SPPPPPPTRPPSVKPP 204
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/93 (25%), Positives = 26/93 (27%)
Frame = +2
Query: 404 NPPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPK 583
+PPPP G PP P P V PPP +P P P
Sbjct: 1064 SPPPPQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVP- 1122
Query: 584 XQKRPKXXKKXRXVXFXPKXPPPPXGXSKKXPP 682
P P PP P G PP
Sbjct: 1123 ----PPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 406 PPXPXXXGFXFWXPXPXPPXKTXGPXXXGXGXGXPXPQGG 525
PP P G P PP P G G P P GG
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,433
Number of Sequences: 37544
Number of extensions: 287284
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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