Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B18
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.28
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.86
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.86
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.86
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.6
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 6.0
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPP G PP +P PPP G P G P + P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 587 QKRPKXXKKXRXVXFXPK--XPPPPXGXSKKXPP 682
P+ + P+ PPP G PP
Sbjct: 300 PPPPRGSPPTGSLP-PPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPP G PP +P PPP G P G P + P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 587 QKRPKXXKKXRXVXFXPK--XPPPPXGXSKKXPP 682
P+ + P+ PPP G PP
Sbjct: 321 PPPPRGSPPTGSLP-PPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPP G PP +P PPP G P G P + P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 587 QKRPKXXKKXRXVXFXPK--XPPPPXGXSKKXPP 682
P+ + P+ PPP G PP
Sbjct: 306 PPPPRGSPPTGSLP-PPQAGGSPPPAGTGSPPPP 338
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.86
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Frame = +2
Query: 458 PPXKPXAPGFXXGXXVXPPPKGXXXFS------PKXGGXPXXKXFXPKXQKRPKXXKKXR 619
PP P P G PPP G + P GG P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP--- 769
Query: 620 XVXFXPKXPPPPXGXSKKXPP 682
P PPPP G K PP
Sbjct: 770 -----PPPPPPPPGGFKGGPP 785
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/83 (28%), Positives = 24/83 (28%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPPG G PP P G PPP G P G P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGL----PPISGGPPPPPPPPGG 767
Query: 587 QKRPKXXKKXRXVXFXPKXPPPP 655
P P PPPP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.86
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Frame = +2
Query: 458 PPXKPXAPGFXXGXXVXPPPKGXXXFS------PKXGGXPXXKXFXPKXQKRPKXXKKXR 619
PP P P G PPP G + P GG P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP--- 769
Query: 620 XVXFXPKXPPPPXGXSKKXPP 682
P PPPP G K PP
Sbjct: 770 -----PPPPPPPPGGFKGGPP 785
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/83 (28%), Positives = 24/83 (28%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPPG G PP P G PPP G P G P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGL----PPISGGPPPPPPPPGG 767
Query: 587 QKRPKXXKKXRXVXFXPKXPPPP 655
P P PPPP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.86
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Frame = +2
Query: 458 PPXKPXAPGFXXGXXVXPPPKGXXXFS------PKXGGXPXXKXFXPKXQKRPKXXKKXR 619
PP P P G PPP G + P GG P P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP--- 352
Query: 620 XVXFXPKXPPPPXGXSKKXPP 682
P PPPP G K PP
Sbjct: 353 -----PPPPPPPPGGFKGGPP 368
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/83 (28%), Positives = 24/83 (28%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPPG G PP P G PPP G P G P P
Sbjct: 297 PPPPGLPPITGGPPPPPPPG--GLPPITGGPPPPPPPGGL----PPISGGPPPPPPPPGG 350
Query: 587 QKRPKXXKKXRXVXFXPKXPPPP 655
P P PPPP
Sbjct: 351 CPPPPPPPPPGGFKGGPPPPPPP 373
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Frame = +2
Query: 410 PPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKXQ 589
PPP G + PP P P PP G +P+ P + P
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPG---MTPRPPPPPSSGMWPPPPP 301
Query: 590 KRPKXXKKXRXVXFXPKXPPP----PXGXSKKXPPXFXGXXXPXG 712
P + P PPP P G PP G P G
Sbjct: 302 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPP 517
PPPP G PP +P AP G PPP
Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/92 (26%), Positives = 28/92 (30%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPPG G PP P G + PPP + GG P P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY---PGGMP-----PPPP 352
Query: 587 QKRPKXXKKXRXVXFXPKXPPPPXGXSKKXPP 682
+ P + P PP G PP
Sbjct: 353 PRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Frame = +2
Query: 410 PPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKXQ 589
PPP G + PP P P PP G +P+ P + P
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPG---MTPRPPPPPSSGMWPPPPP 311
Query: 590 KRPKXXKKXRXVXFXPKXPPP----PXGXSKKXPPXFXGXXXPXG 712
P + P PPP P G PP G P G
Sbjct: 312 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPP 517
PPPP G PP +P AP G PPP
Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/92 (26%), Positives = 28/92 (30%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXPKX 586
PPPPG G PP P G + PPP + GG P P
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY---PGGMP-----PPPP 362
Query: 587 QKRPKXXKKXRXVXFXPKXPPPPXGXSKKXPP 682
+ P + P PP G PP
Sbjct: 363 PRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = +2
Query: 407 PPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXP 559
PPP G FG PP P G G PPP+ SP+ G P
Sbjct: 321 PPPQGAPQQGFGA----PPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGP 367
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 401 KNPPPPGXXXXXFGXXXRXPPXKPXAPGFXXGXXVXPPPKGXXXFSPKXGGXPXXKXFXP 580
+ PPPP P A G+ PPPKG +P G P
Sbjct: 187 RRPPPPPKGTGTPPPPPTGEPQDLSAEGYA-SRRPPPPPKGTGSPTPPPTGEPQDLSGEG 245
Query: 581 KXQKRPKXXKKXRXVXFXPKXPPPPXG 661
+RP K PPPP G
Sbjct: 246 NASRRPPPPPKGTG-----SPPPPPTG 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,178
Number of Sequences: 27780
Number of extensions: 187229
Number of successful extensions: 694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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