Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B17
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...   105   6e-24

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  105 bits (253), Expect = 6e-24
 Identities = 55/123 (44%), Positives = 82/123 (66%), Gaps = 3/123 (2%)
 Frame = +1

Query: 466 RTMFIQTQDTPNPNSLKFLPGTKVLEPG-QTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 642
           R+++I++++TPN N+LKFLPG  +L P   + +F        SPLA+ LF IDGV ++FF
Sbjct: 41  RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFF 100

Query: 643 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTD--AKPSGDTQINEDDDEIVQ 816
           G +FITV+K     +W  +KPE+F  IM+  ++G PV+++   K + DTQI E D +IV 
Sbjct: 101 GKDFITVSK-GAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVA 159

Query: 817 MIK 825
           MIK
Sbjct: 160 MIK 162



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 822 KELLDTRIRPTVQXDXGDV 878
           KEL++T IRP++Q D GDV
Sbjct: 162 KELIETSIRPSIQEDGGDV 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,755
Number of Sequences: 5004
Number of extensions: 66745
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)