Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B17
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920          119   3e-27
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   8.6  

>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
          Length = 139

 Score =  119 bits (287), Expect = 3e-27
 Identities = 62/112 (55%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
 Frame = +1

Query: 466 RTMFIQTQDTPNPNSLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFG 645
           R MFIQTQ TPNP SL F PG  V+E G + DFPN   A  SPLAK LF IDGV  VFFG
Sbjct: 23  RGMFIQTQSTPNPQSLMFYPGKPVMEVGSS-DFPNARTAMTSPLAKALFAIDGVTRVFFG 81

Query: 646 PEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDAK--PSGDTQINE 795
            +F+TVTK  ++  W  LKPE+F  IMDF++SG  +  D+    S DT I+E
Sbjct: 82  SDFVTVTK-SEETSWDYLKPEVFAVIMDFYSSGQSLFLDSSTAASMDTAIHE 132


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 742 GLPVVTDAKPSGDTQINEDDDEIVQMIKN 828
           GL VV    P+G   + E+  EIV++ KN
Sbjct: 219 GLVVVNPGNPTGQVLVEENQCEIVELCKN 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,929
Number of Sequences: 37544
Number of extensions: 379864
Number of successful extensions: 766
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)