Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B17
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical pr...   135   5e-32
U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    29   5.8  
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    29   5.8  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical
           protein R10H10.1 protein.
          Length = 222

 Score =  135 bits (326), Expect = 5e-32
 Identities = 67/121 (55%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
 Frame = +1

Query: 466 RTMFIQTQDTPNPNSLKFLPGTKVL-EPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 642
           R+M+IQ Q+TPNP SLKFLPG ++L +  +T DF +   A  SPLA  L R+DGVK VFF
Sbjct: 14  RSMYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFF 73

Query: 643 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDAKPSGDTQINEDDDEIVQMI 822
           G +F+TVTK D+ VDW LL+PEIF TI D   +G PV+ +A    D Q+ E+DDE+V MI
Sbjct: 74  GEDFVTVTKSDETVDWALLRPEIFSTIADHIQTGKPVINEAATVSD-QV-EEDDEVVMMI 131

Query: 823 K 825
           K
Sbjct: 132 K 132



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 822 KELLDTRIRPTVQXDXGDV 878
           KE+L+TRIRP VQ D GD+
Sbjct: 132 KEILETRIRPMVQEDGGDI 150


>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
 Frame = +1

Query: 406 LSGILKSDIPQKSPAIFACFRTMFIQTQD------TPNPNSLKFLPGTKVLEPGQTLDFP 567
           L  I   D+P++    F C +T+F  + D      TPN  S K   G +  E    LD  
Sbjct: 177 LKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQ--EVADQLDVK 234

Query: 568 NIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFG 717
             G  H +          G  A+     F  + KQ    +W  + P I G
Sbjct: 235 RQGVRHQA----------GSDALLTAATFFKIKKQFFGDNWNQIAPLICG 274


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
 Frame = +1

Query: 406 LSGILKSDIPQKSPAIFACFRTMFIQTQD------TPNPNSLKFLPGTKVLEPGQTLDFP 567
           L  I   D+P++    F C +T+F  + D      TPN  S K   G +  E    LD  
Sbjct: 177 LKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQ--EVADQLDVK 234

Query: 568 NIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFG 717
             G  H +          G  A+     F  + KQ    +W  + P I G
Sbjct: 235 RQGVRHQA----------GSDALLTAATFFKIKKQFFGDNWNQIAPLICG 274


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 445 DSFVECQTLKYLIVHGTFLSAFVKLMRIVHGCTVYY 338
           D  + C T KY + H  ++S F+  ++++     YY
Sbjct: 133 DRLISCYTPKYYLSHQYYVSIFLLFIQLIFTLGTYY 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,169,973
Number of Sequences: 27780
Number of extensions: 373725
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)