Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B16
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    31   0.29 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.5  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    28   2.0  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    27   2.7  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = +1

Query: 193  ELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNRKKLI 372
            E S  + + V++  +++  E L  ++    P    +PP Q  N      P+GP+    L+
Sbjct: 907  EASQTESILVEKEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKPSGPITSSTLL 966

Query: 373  EHINKQ 390
              + ++
Sbjct: 967  ARLKQR 972


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 465 PPPPPEKVRDAEEQITIDLGDEYEQALGTASQEEIIDL 578
           PP PP   R+A     I+  + +    GT++  +I+ L
Sbjct: 76  PPAPPTHQREASPVKNIEHSESFPSVFGTSNNHQIVPL 113


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 306 RWKEIVVRINLLCQHGQFFLSELGQELVHVHFV 208
           R KEI  R+ + C+  + F+  L ++++  HF+
Sbjct: 57  RLKEIYCRLKIRCRLKKKFIKSLSKKIISYHFI 89


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 426 GLTSGRXGGLQCLLVDVLYQFLAIQRTGGIL 334
           G+ SG  G    +L+DV+   L I+ TGG++
Sbjct: 407 GVLSGEEGSDNIVLLDVIPLTLGIETTGGVM 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,704
Number of Sequences: 5004
Number of extensions: 68370
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)