Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B16
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 32 0.70
11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095 31 1.6
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 31 1.6
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 30 2.1
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 30 2.1
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 30 2.8
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 30 2.8
05_05_0273 - 23744218-23744342,23744431-23744521 29 3.7
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567... 29 4.9
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571... 29 4.9
11_06_0610 - 25449085-25453284 29 6.5
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 6.5
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 29 6.5
04_04_0783 - 28040828-28041615,28041942-28043589 28 8.6
03_02_0164 - 6066744-6067637 28 8.6
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 8.6
01_06_1424 - 37269397-37270299 28 8.6
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 465 PPPPPEKVRDAEEQITIDLGD---EYEQALGTASQEEIIDLAAILGFHSMMNQDQYH 626
PPPPPE+ + A D+ D EY +A +I D L H ++ Q Q H
Sbjct: 29 PPPPPEQQQQAGTTTPDDIDDEVMEYYKAKQRCYALQIRDYCCYLQCHHLLLQQQQH 85
>11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095
Length = 270
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 595 NPRMAARSMISSCDAVPRACSYSSPRSIVICSSASRTFSGGGGG 464
+P + +RS S D++ R SY+S I +AS + GGGGG
Sbjct: 12 SPSVCSRSWSISEDSLKRYVSYASESCIQELLAASDSGGGGGGG 55
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 611 SGSVPRVTSEQGPARRTRMGRHHQSHQTQGI 703
S +PR E+G R R G +H+ H +G+
Sbjct: 180 SSGLPRAADEEGDGLRAREGEYHRRHPVRGM 210
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/61 (31%), Positives = 23/61 (37%)
Frame = -1
Query: 478 GGGGGIHFLPPDDAGDERLDLRPVRGSPVLAC*CALSVSCDSTDRWDPSRKRSCYAVTVE 299
GGGGG LPP A ++ DLR L C + CD D + A
Sbjct: 25 GGGGGGQPLPPPHASED--DLRAALADGALLCAALRRLGCDPAAASDEGTGSAAAAAAAA 82
Query: 298 G 296
G
Sbjct: 83 G 83
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 462 IPPPPPEKVRDAEEQITIDLGDEYEQALGTASQ 560
+PPPPP + +Q T+ GD A G+A +
Sbjct: 34 VPPPPPAAAQPQPQQATVAEGDPPPPATGSAEE 66
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +1
Query: 646 ASPSDSDGTASPKP------PNPRYSQMDPPNDTDPDETIARVQ 759
A PSDS GT+S +P P P+ S + P DT T +++
Sbjct: 1486 AKPSDSQGTSSARPPAPMRIPEPKISNVGTPVDTTRTLTTTKIR 1529
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 182 CTGGSCLHTTKWTWTSSCP-SSLKKN*PCWQ 271
C GSC+ T + T SC LKK PC+Q
Sbjct: 378 CHRGSCVETCRLVITKSCRCGGLKKEVPCYQ 408
>05_05_0273 - 23744218-23744342,23744431-23744521
Length = 71
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 570 IDLAAILGFHSMMNQDQYHASLLNKGQPVGLGWDGI 677
+D+ A+ G +M Q + + S N G P G GWDG+
Sbjct: 29 VDVDALRG---LMQQWRNYPSSWNSGDPCGGGWDGV 61
>04_04_0287 -
24156285-24156389,24156477-24156596,24156654-24156740,
24156905-24157057,24157516-24157635,24157788-24157949,
24158029-24158247,24158574-24158616,24159147-24159210,
24159353-24159458,24159585-24159704,24159831-24159911,
24160008-24160050,24160308-24160369,24160477-24160563,
24161004-24161050,24161144-24161276,24161419-24161487,
24161924-24162010,24162317-24162448
Length = 679
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 208 DEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDP 342
+E D+D +L + +EE KEV D+N PS R+N + +P
Sbjct: 36 EEDDIDAILRSIQKEEAKK--KEVHIDENVPAPSPRSNCSLTINP 78
>01_01_0733 -
5715719-5715785,5715908-5715966,5717844-5717884,
5718086-5718134,5718427-5718559,5719303-5719384,
5719990-5720472,5720612-5721024,5721260-5721419,
5721541-5721665,5721756-5721811,5721831-5721889,
5722069-5722180,5722952-5723032
Length = 639
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = -1
Query: 580 ARSMISSCDAVPRACSYSSPRSIVICSSASRTFSGGGGGIHFLPPDDAGDERLDLRPV-R 404
A +S A RA S P+ + ++ + G P AG ++ ++ +
Sbjct: 512 AEKNVSDTGAANRATLSSKPQPVAKTEKSNASSKTAGNK----KPAKAGTKQGNIMSFFK 567
Query: 403 GSPVLAC*CALSVSCDSTDRWDPSRKRSCYAV 308
+PV C C +V DS W P+ K Y V
Sbjct: 568 KAPVRPCLCHFAVWSDSAALWSPTSKADEYNV 599
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 643 RASPSDSDGTASPKPPNPRYSQMDPPNDTDPDE 741
++ P+ +SP PP P PP T P E
Sbjct: 649 KSPPTPESKASSPPPPTPEGHTPSPPKSTPPTE 681
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 643 RASPSDSDGTASPKPPNPRYSQMDPPNDTDPDE 741
++ P+ +SP PP P PP T P E
Sbjct: 616 KSPPTPESKASSPPPPAPEGHTPSPPESTPPSE 648
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +3
Query: 462 IPPPPPEKVRDAEEQITIDLGDEYEQALGTASQEEIIDLAAILGFHSMMNQDQYHASLLN 641
+ PPPP + R A + + +G A G +E + H M+++ H+
Sbjct: 73 VGPPPPPQPRAAPPPVAVAMGSPAPHAQGGGGGQEENKTIWVGDLHYWMDENYLHSCFGY 132
Query: 642 KGQPVGL 662
G+ V +
Sbjct: 133 TGEVVAI 139
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 28.7 bits (61), Expect = 6.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 459 WIPPPPPEKVRDAEEQ 506
W+PPPPP+ A++Q
Sbjct: 15 WVPPPPPQSAAAAQQQ 30
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 715 GPFGNTLGLVA--LVMPSHPSPTGWPLFRSD 629
G FGN LG+VA L +P H PL+R D
Sbjct: 259 GTFGNPLGIVAKQLGLPMHKIRDKCPLYRPD 289
>03_02_0164 - 6066744-6067637
Length = 297
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 487 TFSGGGGGIHFLPPDDAGDERLDLRPVRGSPVLA 386
T SGGGGGI + P +P+ GSP+ A
Sbjct: 186 TMSGGGGGISSIGPQFYSGIGSVTQPINGSPLPA 219
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 465 PPPPPEKVRDAEEQITIDLGDEYEQALGTAS-QEEIIDLAAILG 593
PPPPPE AEEQ D E AL S ++ D A+LG
Sbjct: 144 PPPPPEGESSAEEQPPEDQQKGEEWALAAFSGWMQLGDTHAMLG 187
>01_06_1424 - 37269397-37270299
Length = 300
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 465 PPPPPEKVRDAEEQITIDLGDE 530
PPPPP E ITI +GDE
Sbjct: 44 PPPPPPDPDFPPESITIPIGDE 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,362,337
Number of Sequences: 37544
Number of extensions: 604390
Number of successful extensions: 2401
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -