Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B16
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin pr... 65 7e-11
U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin pr... 59 5e-09
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 37 0.022
U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin pr... 37 0.022
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 34 0.15
AF040642-8|AAB94951.1| 152|Caenorhabditis elegans Hypothetical ... 29 3.3
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 3.3
U41273-3|AAA82455.2| 257|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 28 7.7
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z80219-3|CAN86593.1| 221|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z22181-11|CAE18061.1| 206|Caenorhabditis elegans Hypothetical p... 28 7.7
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 28 7.7
>U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin
protein 1, isoform a protein.
Length = 392
Score = 64.9 bits (151), Expect = 7e-11
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = +1
Query: 172 PAKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGP 351
P+K+Y + L ++ D++ LLS L+ +EL L + DPD++ LPPSQR +K+PTGP
Sbjct: 29 PSKVYNKGLKDLEDNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGP 88
Query: 352 LNRKKLIEHINKQA 393
R L++ + +A
Sbjct: 89 YKRDNLLKFLEDKA 102
Score = 58.0 bits (134), Expect = 8e-09
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Frame = +3
Query: 498 EEQITIDLGDEYEQ---ALGTASQEEIIDLAAILGFHSMMNQDQYHASLLNKGQ--PVGL 662
E I IDL D+ E+ AL TA +++++DLA ILG H+++NQ QY+ +L K Q G
Sbjct: 141 EMPIEIDLDDDEEELECALVTAPEKDLVDLAGILGMHNVLNQPQYYNALKGKTQDESTGT 200
Query: 663 GWDGITKATKPKVFPNGP 716
++GI ++ P++ P+ P
Sbjct: 201 TFNGIMQSYVPRIVPDEP 218
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 694 PRYSQMDPPNDTDPDETIARVQQNDQKLTDLXWNXIKNISDXKFEKLFEALKSXSHXEVL 873
PR +P NDTD + I R++++D L ++ N +K +S + L EA + H E
Sbjct: 211 PRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF 270
Query: 874 S 876
S
Sbjct: 271 S 271
>U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin
protein 1, isoform b protein.
Length = 401
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Frame = +1
Query: 172 PAKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGP 351
P+K+Y + L + D++ LLS L+ +EL L + DPD++ LPPSQR +K+PTGP
Sbjct: 41 PSKVYNKGLK---DNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGP 97
Query: 352 LNRKKLIEHINKQA 393
R L++ + +A
Sbjct: 98 YKRDNLLKFLEDKA 111
Score = 58.0 bits (134), Expect = 8e-09
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Frame = +3
Query: 498 EEQITIDLGDEYEQ---ALGTASQEEIIDLAAILGFHSMMNQDQYHASLLNKGQ--PVGL 662
E I IDL D+ E+ AL TA +++++DLA ILG H+++NQ QY+ +L K Q G
Sbjct: 150 EMPIEIDLDDDEEELECALVTAPEKDLVDLAGILGMHNVLNQPQYYNALKGKTQDESTGT 209
Query: 663 GWDGITKATKPKVFPNGP 716
++GI ++ P++ P+ P
Sbjct: 210 TFNGIMQSYVPRIVPDEP 227
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 694 PRYSQMDPPNDTDPDETIARVQQNDQKLTDLXWNXIKNISDXKFEKLFEALKSXSHXEVL 873
PR +P NDTD + I R++++D L ++ N +K +S + L EA + H E
Sbjct: 220 PRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF 279
Query: 874 S 876
S
Sbjct: 280 S 280
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 712 DPPNDTDPDETIARVQQNDQKLTDLXWNXIKNISDXKFEKLFEALKSXSHXEVLS 876
+P N+ D D+ I ++ ND L ++ N +K ++L EAL H E +S
Sbjct: 80 EPENEVDVDQCIKKLLDNDPSLKEINLNNMKRTPVPAIKRLLEALAYNEHCERIS 134
>U41108-1|AAQ23120.1| 308|Caenorhabditis elegans Tropomodulin
protein 2, isoform a protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 712 DPPNDTDPDETIARVQQNDQKLTDLXWNXIKNISDXKFEKLFEALKSXSHXEVLS 876
+P N+ D D+ I ++ ND L ++ N +K ++L EAL H E +S
Sbjct: 80 EPENEVDVDQCIKKLLDNDPSLKEINLNNMKRTPVPAIKRLLEALAYNEHCERIS 134
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 33.9 bits (74), Expect = 0.15
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +3
Query: 327 LREGSHRSVESQETDRAHQQASTGDPRTGRRXXXXXXXXXGGKKWIPPPPPEKVRDAEEQ 506
LRE S S ES E++ + P + R+ G PPPPP++ +E
Sbjct: 620 LRESSSSSDESDESEGNSSPSEA--PGSPRQQDPEPMEAFGEASEAPPPPPDQGSKDQEA 677
Query: 507 ITIDLGDEYEQALGTASQEEIIDLA 581
I E E+A S E+ +D A
Sbjct: 678 ILDQPVMEPEEAASNGSLEDPLDFA 702
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 649 SPSDSDGTASPKPPNPRYSQMDPPNDTDPDETIARVQQN 765
SP+DS G+ASP SQ P D D+ + +++
Sbjct: 327 SPADSQGSASPDESTEEPSQDHTPQDLPMDQAPPQAEED 365
>AF040642-8|AAB94951.1| 152|Caenorhabditis elegans Hypothetical
protein C50D2.3 protein.
Length = 152
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 670 TASPKPPNPRYSQMDPPNDTDPDETIARVQQNDQ 771
T PPN + ++ DTD D T+A QNDQ
Sbjct: 3 TTGSAPPNSKLKSVE---DTDDDRTLAEDDQNDQ 33
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 465 PPPPPEKVRDAEEQITIDLGDEYEQALGTASQEEIID 575
PPPP +VR EEQ+ + EQ EEI+D
Sbjct: 1016 PPPPKNEVRVQEEQLEGSRKRKLEQIQEEDEDEEILD 1052
>U41273-3|AAA82455.2| 257|Caenorhabditis elegans Hypothetical
protein C26B9.3 protein.
Length = 257
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +1
Query: 172 PAKLYGRELSTYDE-VDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTG 348
P+KL E DE ++ L E M E+D +++PP +NN EK P
Sbjct: 145 PSKLSRPEHKLIDEDCKCGDMQPGLYDIETEMCTPEMDDFKDYIPPEIQNN-ILEKKPIS 203
Query: 349 PLNRKKLIEHINKQALETPXPAGGQAFRPRR 441
L++ + + E+ A G+A RR
Sbjct: 204 MFITVYLMDMEPRSSKESYLSAFGKAILQRR 234
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 6 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 43
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical
protein T01H8.5c protein.
Length = 1971
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 46 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 83
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical
protein T01H8.5a protein.
Length = 2032
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 107 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 144
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 6 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 43
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical
protein T01H8.5c protein.
Length = 1971
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 46 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 83
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical
protein T01H8.5a protein.
Length = 2032
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 107 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 144
>Z80219-3|CAN86593.1| 221|Caenorhabditis elegans Hypothetical
protein T01H8.5b protein.
Length = 221
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 107 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 144
>Z22181-11|CAE18061.1| 206|Caenorhabditis elegans Hypothetical
protein ZK632.14 protein.
Length = 206
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 575 SCGHPRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQGIPKWTRPTTRTRMKRSLE 754
SC + D + +P + + G + + G + +T KW +P T R K + E
Sbjct: 134 SCMSMQCSSDKDIAFLPVIRTSHG-GKADKKGEKKGNRKTNEGNKWMKPNTEQRKKENKE 192
Query: 755 CNKMTR 772
N++ +
Sbjct: 193 RNQLLK 198
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 587 PRIPLDDESGSVPRVTSEQGPARRTRMGRHHQSHQTQG 700
P + DE+GS+P + P ++TR R +S G
Sbjct: 46 PNASIRDENGSMPSLLPRTAPIKKTRKHRRRRSGSFTG 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,198,593
Number of Sequences: 27780
Number of extensions: 440069
Number of successful extensions: 1556
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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