Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B15
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   8.6  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 694 CGNPCGKAECLVHL*RSTEVCPNQDNGLL 608
           CGNP     CL    R   +C  QD  ++
Sbjct: 192 CGNPWNTRYCLTPTERLEALCWTQDEDII 220


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 694 CGNPCGKAECLVHL*RSTEVCPNQDNGLL 608
           CGNP     CL    R   +C  QD  ++
Sbjct: 139 CGNPWNTRYCLTPTERLEALCWTQDEDVI 167


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 310 IYGLVLAPNLYILQWNNIHQTNRFY 236
           +YG+ L+P  + L +N+    N +Y
Sbjct: 252 VYGMALSPVTHNLYYNSPSSENLYY 276


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 482 SFFVSKHERVSH-ATALFLPPHIYT 411
           SF VSKHE VS  +TA   P ++ T
Sbjct: 711 SFKVSKHEEVSRTSTAGQFPTNVAT 735


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 234 TDTYSCMIDSHRSPFD 187
           T T +CM+D H  P D
Sbjct: 156 TTTLACMMDLHYYPLD 171


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 EPIPVHILNTATLRWTSVNYKRSDV 363
           EP+  H+LN    RW  +  + S +
Sbjct: 114 EPLSPHLLNLEVERWRPLRSRLSPI 138


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = +1

Query: 235 DKIYSFGGYCSTEEYKDWEPIP-VHILNTATLRWTSVNYKRSDVVPFQ-RYGHTAV---A 399
           DK Y   GY + E  K   P P   I +   + W  +  K    +PF   + HT +   A
Sbjct: 212 DKFYGTPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRK----LPFAGLHSHTIIYLSA 267

Query: 400 YGHK 411
            GH+
Sbjct: 268 KGHR 271


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 487 IRVSLCRSTREYHMLPHYSCRPTYIP 410
           I V  C++T   H L +  C P  IP
Sbjct: 24  IGVDECQATPVIHFLQYPGCVPKPIP 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,625
Number of Sequences: 438
Number of extensions: 6026
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)