Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B14
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 169 6e-43
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 105 1e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 8e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 3e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 63 6e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 62 1e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 61 2e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 60 3e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 2e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 4e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 56 7e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 6e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 1e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 49 1e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 46 5e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 7e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 2e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 43 5e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 2e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.003
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 36 0.006
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.071
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.071
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.38
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.66
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 1.2
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 2.0
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 4.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 169 bits (410), Expect = 6e-43
Identities = 76/137 (55%), Positives = 98/137 (71%)
Frame = +1
Query: 295 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 474
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 475 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVHINNQ 654
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++ G++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 655 PPIRRGDGPIALVLAPT 705
P + GDGPI LVLAPT
Sbjct: 188 PLLSPGDGPIVLVLAPT 204
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 105 bits (251), Expect = 1e-23
Identities = 47/133 (35%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Frame = +1
Query: 310 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 486
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 487 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVHINNQPPIR 666
+ ++GY++PT IQAQ P SG+++ GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 667 RGDGPIALVLAPT 705
G+GPIA+++ PT
Sbjct: 488 TGEGPIAIIMTPT 500
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.0 bits (211), Expect = 8e-19
Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Frame = +1
Query: 406 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXG 585
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 586 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPT 705
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPT
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPT 334
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.7 bits (173), Expect = 3e-14
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Frame = +1
Query: 397 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 567
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 568 GKNLXGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 705
G+++ G+A+TGSGKT+A+ +PA+ ++N + P LV++PT
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPT 245
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 62.9 bits (146), Expect = 6e-11
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 642
F+E D + + + +G+K PTPIQ + P+ ++ +++ G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 643 I-NNQPPIRRGDGPIALVLAPT 705
+ NN P A+VLAPT
Sbjct: 108 LWNNPSPF------FAVVLAPT 123
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 642
F+ N +++ V G+K+ TP+QA P+ + K+L A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 643 INNQPPIRRGDGPIALVLAPT 705
+ + G G AL++APT
Sbjct: 63 VTRRDTDETGLG--ALIVAPT 81
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 61.3 bits (142), Expect = 2e-10
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +1
Query: 421 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 600
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 601 SGKTLAYILPAI 636
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 60.5 bits (140), Expect = 3e-10
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = +1
Query: 433 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKT 612
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 613 LAYILPAIVHINNQPPIRRGD-GPIALVLAPT 705
AY++P + + Q I G AL+L PT
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPT 97
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.0 bits (134), Expect = 2e-09
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Frame = +1
Query: 391 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 570
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 571 KNLXGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPT 705
+++ G A+TGSGKTLA+++P I ++ P R G G ++++PT
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPT 170
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.8 bits (131), Expect = 4e-09
Identities = 28/81 (34%), Positives = 48/81 (59%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 642
F+ N + +G+ +G++ PT IQ + P+A+ GK++ G A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 643 INNQPPIRRGDGPIALVLAPT 705
+ +P ++ L+L PT
Sbjct: 321 LLYRP--KKVPTTRVLILCPT 339
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 56.0 bits (129), Expect = 7e-09
Identities = 22/63 (34%), Positives = 40/63 (63%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 642
F+ + + + G+K PTPIQ + P+ + G+++ G+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 643 INN 651
+ +
Sbjct: 131 LKS 133
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.8 bits (121), Expect = 6e-08
Identities = 33/103 (32%), Positives = 52/103 (50%)
Frame = +1
Query: 397 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 576
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 577 LXGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 705
+ G A+TGSGKTLA+I+P I ++ + DG ALV++PT
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPT 120
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 51.6 bits (118), Expect = 1e-07
Identities = 20/64 (31%), Positives = 41/64 (64%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 642
FE+ + G+ G++ P+PIQ + PIA+SG+++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 643 INNQ 654
++ +
Sbjct: 106 VDTK 109
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 48.8 bits (111), Expect = 1e-06
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Frame = +1
Query: 316 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 489
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 490 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVHINNQPPIR 666
+ + +K E T IQ P S ++L A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 667 RGDGPIALVLAPT 705
G A+++APT
Sbjct: 114 --GGYRAIIVAPT 124
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 46.4 bits (105), Expect = 5e-06
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 454 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVAQTGSGKTLAYIL 627
++ FEE + +G+ +M +++P+ IQ + P+ +S +N+ G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 628 PAIVHINNQPPIRRGDGPIALVLAPT 705
+ ++ P P A+ LAP+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPS 193
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.0 bits (104), Expect = 7e-06
Identities = 28/81 (34%), Positives = 39/81 (48%)
Frame = +1
Query: 463 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 642
F + ++ +K + EPT IQ + G+N G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 643 INNQPPIRRGDGPIALVLAPT 705
+ P G AL+L PT
Sbjct: 69 WSKDP-----SGIFALILTPT 84
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 514 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 687
G+ +P PIQ+ P A G ++ G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 688 LVLAPT 705
LV+APT
Sbjct: 196 LVVAPT 201
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 43.2 bits (97), Expect = 5e-05
Identities = 29/103 (28%), Positives = 53/103 (51%)
Frame = +1
Query: 397 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 576
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 577 LXGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 705
+ AQ+G+GKT + + + I+ +R AL+L+PT
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPT 98
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.5 bits (93), Expect = 2e-04
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 511 MGYKEPTPIQAQGWPIAMS--GKNLXGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 678
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 679 PIALVLAPT 705
A+++APT
Sbjct: 217 IYAVIMAPT 225
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 430 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLXGVAQTGSG 606
S ++ P + E A+ + + G+++ TP+Q + + + +N A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 607 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 705
KTLA++L A + P +++L+PT
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPT 121
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/84 (25%), Positives = 44/84 (52%)
Frame = +1
Query: 454 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPA 633
I F++ N + +G+ G++ P+ IQ + + +++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 634 IVHINNQPPIRRGDGPIALVLAPT 705
+ I+ +++ AL+LAPT
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPT 96
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 574 NLXGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAP 702
NL V TG GK+L++++PA++ Q P + + LVL P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVP 1249
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 574 NLXGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAP 702
NL V TG GK+L++++PA++ Q P + + LVL P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVP 1249
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 562 MSGKNLXGVAQTGSGKTLAYILPAIV 639
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 553 PIAMSGKNLXGVAQTGSGKTLAYILPAI 636
P+ G ++ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 315 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 142
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 141 HDYFSDLVEDVYLNYGFFLTQG 76
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 33 SLRFCFHRAAVVKVDPASERIHSLNKHLQLNPKNNHV 143
+L+ C +R ++ DP S + + HL L+ KN+ V
Sbjct: 260 TLKLCLYRR-IIGFDPPSWKTQQMMSHLNLSRKNSEV 295
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 421 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 600
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 601 SGKTLAYILPAIVHINNQPPIRRGD 675
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 511 MGYKEPTPIQAQGWPIAM-SGKNLXGVAQTGSGKTLAYILPAIVHINN 651
+ Y+ IQ+ +PIA + +N+ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 525 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 400
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -3
Query: 561 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 382
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 381 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 214
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 213 IIAEFVASSKFGTTVSTAII 154
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 385 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 516
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 385 PYEVEEYRNKHEVTVS 432
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 360 WIIKVFVERLE*NRIPIWASHVLPSREF 277
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,967
Number of Sequences: 5004
Number of extensions: 64650
Number of successful extensions: 201
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -