Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B14
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       75   9e-16
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.92 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 74.9 bits (176), Expect = 9e-16
 Identities = 35/73 (47%), Positives = 46/73 (63%)
 Frame = +1

Query: 418 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQT 597
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L   AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 598 GSGKTLAYILPAI 636
           GSGKT A+ +P I
Sbjct: 243 GSGKTAAFAVPII 255


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 525 TDAHSSSRLADSYVWKEFXWRSPNGF 602
           +D+ +  +L + Y WK   +  PNG+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGY 41


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 21  TIGNSLRFCFHRAAVVKVD 77
           T+G +LR+ + R  + KVD
Sbjct: 513 TMGRALRYYYQRGILAKVD 531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,785
Number of Sequences: 438
Number of extensions: 4431
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)