Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B12
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 31 1.6
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 4.9
08_01_0156 - 1233431-1233925 29 6.5
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.5
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
07_03_1028 - 23378140-23378802 28 8.5
06_03_0218 + 18219956-18220555 28 8.5
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.5
03_04_0061 - 16949038-16950006 28 8.5
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 521 CWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 679
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 631 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCV-HEP-- 795
P S+ + +PVPTLP++ + F G S H + R Y S G V HEP
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 796 PFSPTAAP-YP 825
P P AAP YP
Sbjct: 342 PSYPPAAPSYP 352
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = -1
Query: 843 TQDDSYRIRRSGRAERGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQG 664
+Q + +++R A+ G + ++ +++H+++ + + +R A REK G +
Sbjct: 91 SQSEIHQLRIQAIAKDGEIERLKVEISEVHKSKSQSLELIEQRDAEIREKDGIIQNYLDK 150
Query: 663 RNRRAHEGASRGKRL 619
A AS+G R+
Sbjct: 151 IVNLADSSASKGARI 165
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 774 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 601
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 600 RVSPPLT 580
R SP ++
Sbjct: 149 RASPTVS 155
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 157 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 56
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_03_1028 - 23378140-23378802
Length = 220
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -1
Query: 837 DDSYRIRRSGRAERGFVHTAQLGANDLHRTEIPTA*AMRKRHASRRE-KGGQVSGKRQGR 661
D +YR + + + A++ N R A + R R +GG + +R+ +
Sbjct: 74 DYAYRASKKKKQQAAAEQAARMPNNRTTRPTTRRASSSRSRTKEESHARGGGAAPRRENK 133
Query: 660 NRRAHEGASRG-KRLVSL*SCRVSPPLT 580
+R+ G R +R ++ RV PP T
Sbjct: 134 DRKDGAGGRRSQRRAPTISGPRVPPPAT 161
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 708 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 613
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 729 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 628
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 603 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 719
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,194,231
Number of Sequences: 37544
Number of extensions: 517956
Number of successful extensions: 1657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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