Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B11
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    34   0.031
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    30   0.38 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   4.7  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   6.3  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 31/96 (32%), Positives = 48/96 (50%)
 Frame = +1

Query: 334 LKESNDGIEFENDSQLLQDGIKLLVQPENLKKVNVFEENEKRNLSITLXNVLWISI*IKM 513
           LKE+ D ++F+  S++LQD ++L      L K N FE+   +NLS  L  +L I    K 
Sbjct: 135 LKETLDNVDFDARSKILQD-LRLEYAEILLTKFN-FEKKGYQNLSSALDTILHIKKFSKF 192

Query: 514 *TF*SIR*NDVPENYSKPTEDNQ*SVDESNNIKEHL 621
                 +  ++  N+SK  ED Q +V+    I   L
Sbjct: 193 PNGLVTQLCNIFVNHSKAREDIQKAVNHICKIDSSL 228


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +1

Query: 244 FNKENGYEIFITDFIYLWHVYFTEITFLTQLKESNDGIEFENDSQLLQDGIKLLVQPENL 423
           F K + + +F+   + L   YF + T LT+ KESN  + F N+   +  G+  +  P   
Sbjct: 40  FTKTHLHRLFVFVVLLLCSGYFLKHTLLTRPKESNVVMIFVNN---IGGGVLDVKSPRQW 96

Query: 424 KKVNVFEENEKR 459
           +   +  EN+K+
Sbjct: 97  ELEKISTENKKK 108


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 307 FTEITFLTQLKESNDGIEFENDS 375
           FT +TF   + + +D +EF+ DS
Sbjct: 174 FTNLTFPEPISDDSDSVEFQRDS 196


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +2

Query: 509 KCRLSRVSDEMMFQKITQNL-LKIINDLW---MSQTILRNTLNKKDKELTAYKTKFGEIQ 676
           KC L+R+ DE+   ++T +L  K I  +W    S T  R  L + +K+    K  +  I+
Sbjct: 135 KCFLARLEDEVFQGRLTSSLEKKEIGIVWSKSFSTTAGRANLKRNNKDAPLGKKTYAYIE 194

Query: 677 HKHK 688
              K
Sbjct: 195 LSDK 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,272
Number of Sequences: 5004
Number of extensions: 71397
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)