Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B11
(891 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 3.7
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 4.9
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 4.9
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 4.9
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 4.9
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 4.9
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 23 4.9
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 4.9
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 8.6
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -3
Query: 721 HVKFITEWFSFFVFVLNF 668
H I EW SFF+ + +
Sbjct: 403 HFAAIIEWLSFFIVIFTY 420
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.9
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 506 LKCRLSRVSDEMMFQKITQNLLKIINDLWMSQTILRNTLNKKDKELTAYKTKFGEIQHKH 685
LK R S + ++ +N+L N++ +T+L + K + E K K+ I
Sbjct: 159 LKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCK-KYA-ISSNS 216
Query: 686 KKTEPFSDELHMNTHNMYE 742
++ S + + H+ YE
Sbjct: 217 LRSRSRSFQRTSSCHSRYE 235
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 792 YCLL*ILLGIADSP 751
YCL+ I+LG +D+P
Sbjct: 325 YCLVNIVLGDSDTP 338
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,360
Number of Sequences: 438
Number of extensions: 4862
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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