Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B09
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   6.3  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   6.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 36/136 (26%), Positives = 52/136 (38%)
 Frame = -1

Query: 721 PCQVTSAVSFPSCPKTTQA*SSDKARCTSCLPNT*QPAVTANATPKQSNLLPVKKL*IDC 542
           P   T+  +  S P T+   +S     +S  P T  P  T N T   S L     +    
Sbjct: 549 PLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPN 608

Query: 541 KCARSL**LRVNEFQTTSATFLTKSLVA*APLRSFASTPVRMRLTNRS*SERTSSHSIHG 362
             + S    +V+   TT  T  + S V        +ST + +  TNR+ +  TSS SI  
Sbjct: 609 STSSSS--TQVSWNSTTPITGTSTSKVT-------SSTSIPLTSTNRTSTTFTSSTSIST 659

Query: 361 NFILTKLFECKFTSLS 314
           +   T      F S S
Sbjct: 660 SSSSTATSSTSFASES 675


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 696 PFHLVQKLPRHDLQTKRDVRLVYPIL 619
           PF LV+ LP+ + ++K+D  L++  L
Sbjct: 76  PFLLVRYLPKLEFESKKDTGLIFSAL 101


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 701 RFLSILSKNYPGMIFRQSEMYV 636
           ++LS L K YP M+FR  E+ V
Sbjct: 43  QYLSNLEKRYPIMVFRNDEITV 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,686
Number of Sequences: 5004
Number of extensions: 58889
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)