Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B09
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical p...    29   6.0  
Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 754 VGDGVSARSWLYVAGKPVVCTRVMXFGSTGII 849
           +GDG+  RSW+YV       TRV   G+ G I
Sbjct: 221 MGDGLHTRSWMYVEDCSEAITRVALEGTLGEI 252


>Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical
           protein F26D2.16 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 419 AYRRRCKAPEWRLRYKRFS*KGCGR 493
           A R R +AP  RL   +FS KGCGR
Sbjct: 308 AIRSRARAPVDRLLSYKFSYKGCGR 332


>Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.8 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 394 SERTSSHSIHGNFILTKL-FECKFTSLSPILIFVKLFST 281
           SE ++  SIHGN I     FE  F+ L PI  F  +  T
Sbjct: 2   SESSAKDSIHGNLIYINFEFELNFSLLFPIAPFCYIVPT 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,531,397
Number of Sequences: 27780
Number of extensions: 342056
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)