Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B07
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.7  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   8.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.8  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +1

Query: 550 SIGSAPLTSITKIDAXVRGGETRXDYKDTRRFPXG-----SSLVRSPXPTPARXPGYLSA 714
           ++G+AP   I  +D       T   +K  R++P       ++L  SP P     P Y+ A
Sbjct: 65  AMGAAPTNIIGSVDQQPPVSHT--SHKSRRQYPAEVFELTNTLAASPAPPSLSEPSYVMA 122

Query: 715 LPPXREP 735
             P   P
Sbjct: 123 RTPSSSP 129


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 338 RALADSLMQKKPPTPPPE 285
           R L DS ++ +PP PPP+
Sbjct: 195 RLLEDSAVKAQPPPPPPQ 212


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 419 SPQPNDRAQRVSERGSGRAPNTQTASPRALADSLMQKKPPTPP 291
           +P P    +RVS+  S  + +   A+  + A  + +  PP PP
Sbjct: 186 APLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPP 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,610
Number of Sequences: 5004
Number of extensions: 54713
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)