Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B07
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0179 - 15366119-15366916 31 1.8
10_08_0229 - 16016818-16017387 30 2.3
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 30 2.3
09_02_0252 - 6315834-6315959,6316074-6317018 30 3.1
06_03_0106 + 16702019-16702600 29 4.1
10_01_0144 - 1705429-1706250 29 5.4
11_04_0184 - 14645630-14645905,14645997-14646701 29 7.1
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.1
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 29 7.1
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.4
05_05_0057 + 21995018-21997006 28 9.4
03_05_0576 + 25765137-25766420 28 9.4
>09_04_0179 - 15366119-15366916
Length = 265
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/88 (32%), Positives = 31/88 (35%)
Frame = -2
Query: 935 GGGXSXGX*XGVGXXRXIG*PGKRXXXGSGLKPGGFXXTQAQLGXGXALQPEXRIPYRGE 756
GGG G G G IG GSG G F + + G G A R
Sbjct: 35 GGGGGIGI--GTGISIGIGGGAGGSGSGSGSGSGSFSGSGSSSGSGSASGSGSRSSAGSS 92
Query: 755 VMKKSXNGSRXGGRADRYPGXRAGVGXG 672
V S GS G A Y G AG G G
Sbjct: 93 V--GSSAGSSAGSGAGSYAGSGAGSGSG 118
>10_08_0229 - 16016818-16017387
Length = 189
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2
Query: 770 PYRGEVMKKSXNGSRXGGRADRYPGXRAGVGXGERT 663
PYRG G GGRAD Y G +G G G T
Sbjct: 103 PYRGSSNAGGTGGGEGGGRADGYYG-SSGYGSGSGT 137
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 30.3 bits (65), Expect = 2.3
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 1/111 (0%)
Frame = +1
Query: 526 KRPRCWRFSIGSAPLTSITKIDAXVRGGETRXDYKDTRRFPXGSSLVRSPXPTPARXPGY 705
+R + WR S+P +S+ + + G + + R P SP P+P GY
Sbjct: 29 RRGKHWRPR--SSPSSSLLRNKGKGKKGSSNRQHGSNRPSPKPPL---SPPPSPGNGKGY 83
Query: 706 LSALPPXREP-XXLFFXTSPLXGILXSGCRAXPXPSWACVXXNPPGFSPEP 855
S P P SP+ G SG + P+ +C N P P P
Sbjct: 84 QSPYQPSPSPSPNAPVSPSPVNG---SGHASPKSPTPSCGKGNQPPSRPTP 131
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 419 SPQPNDRAQRVSERGSGRAPNTQTASPRALADSLMQKKPPTPPP 288
+P P + R+S S R P+ + PRA + PP PPP
Sbjct: 41 TPGPVPSSPRLST-SSSRTPSPRAHRPRAATPFANENHPPPPPP 83
>06_03_0106 + 16702019-16702600
Length = 193
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/77 (29%), Positives = 24/77 (31%)
Frame = +3
Query: 705 PVRPSSXSGTVXAFLHXLTPVXYPXFRL*GRSLPKLGLCXTKPPRF*PRTGXXPFSRLXY 884
P P T LH LTP P F L G L C PP + G S
Sbjct: 101 PSSPDCMPETPETLLHTLTPANPPEFLLRG----TLAACHRAPPFYMAAGGFGESSASPL 156
Query: 885 XPXXSNPXLXXXTXXXP 935
P NP T P
Sbjct: 157 APSLPNPRRIIKTGHAP 173
>10_01_0144 - 1705429-1706250
Length = 273
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 416 PQPNDRAQRVSERGSGRAPNTQTASPRALADSLMQKKPPT 297
P P R R + G+GRAP+ Q + R L S +++ PT
Sbjct: 107 PSPLPRVARSGQSGAGRAPH-QRRTRRQLGQSWHRRRRPT 145
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -2
Query: 854 GSGLKPGGFXXTQAQLGXGXALQPEXRIPYRGEVMKKSXNGSRXGGRADRYPGXRAGVGX 675
G+G G T A G QP G ++++S + S D G R G
Sbjct: 191 GTGAPHGATAGTGAYPHAGGQFQPAREEHKTGGILRRSGSSSSSSSSEDDGMGGRRKKGI 250
Query: 674 GERTRE-LPXGKR 639
E+ +E LP G +
Sbjct: 251 KEKIKEKLPGGNK 263
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.1
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 370 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKAXKXPGTV 525
P PRS RC GCG R Q TQR P N IT E TC + P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>03_02_0466 -
8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 368 RAPNTQTASPRALADSLMQ---KKPPTPPP 288
R+P TA+P AD + + K+PP PPP
Sbjct: 52 RSPQETTAAPSKPADEVSEGNLKRPPPPPP 81
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 319 NESAN---ARGEAVCVLGALPLPRSLTRCAR 402
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>05_05_0057 + 21995018-21997006
Length = 662
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 404 DRAQRVSERGS-GRAPNTQTASPRALADSLMQKKPPTPPP 288
D +RV + + G P + +A+ ALA + + PP PPP
Sbjct: 140 DDRERVRDGTAFGAFPASSSAAAAALASEVQPQPPPPPPP 179
>03_05_0576 + 25765137-25766420
Length = 427
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 422 RSPQPNDRAQRVSERGSGRAPNTQTASPRALADSLMQKKPPTPPP 288
R +P+ A R +RG AP + + SP + + PP PPP
Sbjct: 48 RLKKPSASASRRKKRGGPEAPPSPSPSP-SPSPPPQPSSPPPPPP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,482,971
Number of Sequences: 37544
Number of extensions: 471076
Number of successful extensions: 1606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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