Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B07
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39677-3|AAC47957.2|  565|Caenorhabditis elegans Hypothetical pr...    32   0.68 
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   3.6  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   3.6  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   3.6  
AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical...    29   4.8  

>U39677-3|AAC47957.2|  565|Caenorhabditis elegans Hypothetical
           protein C16E9.1 protein.
          Length = 565

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +1

Query: 685 PARXPGYLSALPPXREPXX---LFFXTSPLXGILXSGCRAXPXPSW 813
           P   PGY+  +PP   P       F T+P      +G RA P P W
Sbjct: 29  PYNPPGYMPPMPPTDPPGYDPDSTFDTTPTPAPPSNGLRAPPMPKW 74


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 416  PQPNDRAQRVSERGSGRAPNTQTA---SPRALADSLMQKKP---PTPPPEL 282
            P+P  +   V E      PN Q A   SP  LAD+  Q KP   P PP  L
Sbjct: 1002 PRPKVKTTAVDETPQNLVPNNQPAQPSSPSFLADADEQTKPLLKPAPPTTL 1052


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 416  PQPNDRAQRVSERGSGRAPNTQTA---SPRALADSLMQKKP---PTPPPEL 282
            P+P  +   V E      PN Q A   SP  LAD+  Q KP   P PP  L
Sbjct: 1002 PRPKVKTTAVDETPQNLVPNNQPAQPSSPSFLADADEQTKPLLKPAPPTTL 1052


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -2

Query: 416  PQPNDRAQRVSERGSGRAPNTQTA---SPRALADSLMQKKP---PTPPPEL 282
            P+P  +   V E      PN Q A   SP  LAD+  Q KP   P PP  L
Sbjct: 1002 PRPKVKTTAVDETPQNLVPNNQPAQPSSPSFLADADEQTKPLLKPAPPTTL 1052


>AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical
           protein Y105E8A.28 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -2

Query: 413 QPNDRAQRVSERGSGRAPNT---QTASPRALADSLMQKKPPTPPPEL 282
           QPN R  RV E   G APN    Q   P+    +  Q   P PPP L
Sbjct: 82  QPNQRLCRVGEHRDGIAPNLLRHQAFVPQVAPLAGPQPFVPPPPPPL 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,711,455
Number of Sequences: 27780
Number of extensions: 356359
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)