Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B05
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   143   3e-35
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   133   4e-32
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   2.7  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   4.7  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  143 bits (346), Expect = 3e-35
 Identities = 82/199 (41%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
 Frame = +1

Query: 280 VEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSARYLPRLV-QKIYRW 456
           V+GGHRAI  +RIGG++  ++ E  HF IPW +  + + Y +    R +  L   K  + 
Sbjct: 39  VDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIE--TAIDYDVRAKPRNISSLTGTKDLQM 96

Query: 457 *TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVS 636
                             +YR LG DYDE+VLPSI NEVLKSVVA+FNASQLITQR++VS
Sbjct: 97  VNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVS 156

Query: 637 LLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXXKXER 816
            L+R  L++RAA FNI+LDDVSLT + F  E+T                       + E+
Sbjct: 157 RLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEK 216

Query: 817 XQKIVQAEGEXEAXXMLGK 873
              IV+A+GE  A  ++G+
Sbjct: 217 QGFIVRAQGEGRAAQLIGE 235



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +3

Query: 420 ISSPTGSKDLQMVNISLRVLSRPDANML 503
           ISS TG+KDLQMVNI+ RVLSRPD + L
Sbjct: 85  ISSLTGTKDLQMVNINCRVLSRPDVHAL 112


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  133 bits (321), Expect = 4e-32
 Identities = 77/199 (38%), Positives = 110/199 (55%), Gaps = 1/199 (0%)
 Frame = +1

Query: 280 VEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSARYLPRLV-QKIYRW 456
           V GG RA++ +R+ GVQ+ V  E  HF IPW Q    + Y + T  R +      K  + 
Sbjct: 29  VPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQ--KAIVYDVRTRPRNIATTTGSKDLQM 86

Query: 457 *TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVS 636
            +                +Y+ LG DYDE+VLPSI NE+LKSVVA+F+A++LITQR+ VS
Sbjct: 87  VSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVS 146

Query: 637 LLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXXKXER 816
             IR+ELV+RA +F I L+DVS+T ++FG E+T                       + ER
Sbjct: 147 AKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQER 206

Query: 817 XQKIVQAEGEXEAXXMLGK 873
              +++AEGE EA  ++ K
Sbjct: 207 QANVIRAEGEAEAADIVSK 225



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +3

Query: 420 ISSPTGSKDLQMVNISLRVLSRPDANML 503
           I++ TGSKDLQMV+++LRVL RP+  ML
Sbjct: 75  IATTTGSKDLQMVSLTLRVLHRPEVGML 102


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 396 ISDPDLGKISSPTGSKDLQMVNISLRVLSRPD 491
           I+ P++ KI   TGS+ L+ + +  ++ + PD
Sbjct: 542 ITSPEINKILRGTGSQPLKAIGLLKKICNHPD 573


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +2

Query: 326 YNSTYSPXVCTSVYRGFNTPVIYDIR--SRPRQDIFPDWFKRFTDGK 460
           Y S     +    YR FN P +YD      P  D+  D  K F D K
Sbjct: 20  YESRLDQFLSEGQYRDFNLPSVYDHARIDNPSGDVNNDLSKGFVDLK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,458
Number of Sequences: 5004
Number of extensions: 58827
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)