Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B05
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 139 2e-33
02_04_0362 - 22366668-22367516 130 2e-30
04_04_0143 - 23091613-23092467 126 2e-29
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 115 4e-26
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 102 3e-22
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 48 1e-05
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 31 1.6
11_02_0089 + 8203056-8203535 29 6.6
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 29 6.6
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 28 8.7
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 139 bits (337), Expect = 2e-33
Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 5/203 (2%)
Frame = +1
Query: 280 VEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSARYLPRLVQKI---- 447
VEGGHRAI+ NR+ G++ V+ E HF IPWF+ P I R P LV+
Sbjct: 34 VEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERP------IIYDVRARPNLVESTSGSR 87
Query: 448 -YRW*TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 624
+ +P T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR
Sbjct: 88 DLQMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQR 147
Query: 625 QQVSLLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXX 804
+ VS IR+ L ERA++FNI LDDVS+T LSFG E+T
Sbjct: 148 EAVSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKA 207
Query: 805 KXERXQKIVQAEGEXEAXXMLGK 873
+ ++ I++A+GE ++ ++G+
Sbjct: 208 EQDKRSAIIRAQGEAKSAQLIGE 230
Score = 35.1 bits (77), Expect = 0.075
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 420 ISSPTGSKDLQMVNISLRVLSRP 488
+ S +GS+DLQMV I LRVL+RP
Sbjct: 80 VESTSGSRDLQMVRIGLRVLTRP 102
>02_04_0362 - 22366668-22367516
Length = 282
Score = 130 bits (313), Expect = 2e-30
Identities = 79/208 (37%), Positives = 113/208 (54%), Gaps = 6/208 (2%)
Frame = +1
Query: 277 TVEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQI------PTSARYLPRLV 438
TV+GG RA++ +R GV +E HF +PW Q P + TS ++V
Sbjct: 35 TVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQMV 94
Query: 439 QKIYRW*TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLIT 618
R P +D++P ++ LG +YDEKVLPSI NEVLK+VVA+FNA QL+T
Sbjct: 95 SLTLRVLARPD---IDRLP----DIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT 147
Query: 619 QRQQVSLLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXX 798
+R VS L+R L+ RAA+FNI+LDDV++T L++G E++
Sbjct: 148 ERPHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVA 207
Query: 799 XXKXERXQKIVQAEGEXEAXXMLGKXWA 882
+ ER IV+AEGE EA ++ + A
Sbjct: 208 RAEQERRAAIVRAEGESEAARLISEATA 235
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +3
Query: 423 SSPTGSKDLQMVNISLRVLSRPDANML 503
SS +G+KDLQMV+++LRVL+RPD + L
Sbjct: 83 SSTSGTKDLQMVSLTLRVLARPDIDRL 109
>04_04_0143 - 23091613-23092467
Length = 284
Score = 126 bits (304), Expect = 2e-29
Identities = 75/203 (36%), Positives = 106/203 (52%), Gaps = 1/203 (0%)
Frame = +1
Query: 277 TVEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSAR-YLPRLVQKIYR 453
TV+GG RA++ +R GV E HF +PW Q P + I T + K +
Sbjct: 34 TVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKP--FVFDIRTRPHNFSSNSGTKDLQ 91
Query: 454 W*TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQV 633
+ T++ LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R V
Sbjct: 92 MVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTERPHV 151
Query: 634 SLLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXXKXE 813
S L+R L+ RA +FNIILDDV++T LS+G E++ + E
Sbjct: 152 SALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKAEQE 211
Query: 814 RXQKIVQAEGEXEAXXMLGKXWA 882
R IV+AEGE E+ ++ + A
Sbjct: 212 RRAAIVRAEGESESARLISEATA 234
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/23 (73%), Positives = 22/23 (95%)
Frame = +3
Query: 423 SSPTGSKDLQMVNISLRVLSRPD 491
SS +G+KDLQMVN++LR+LSRPD
Sbjct: 82 SSNSGTKDLQMVNLTLRLLSRPD 104
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 115 bits (277), Expect = 4e-26
Identities = 71/189 (37%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Frame = +1
Query: 322 GVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSARYLPRLVQKI-----YRW*TFPSEYFLD 486
G V+ E HF IPWF+ P I R P LV+ +
Sbjct: 126 GTIYQVYPEGTHFMIPWFERP------IIYDVRARPNLVESTSGSRDLQMVKIGLRVLTR 179
Query: 487 QMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVER 666
MP T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ER
Sbjct: 180 PMPEKLPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTER 239
Query: 667 AADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXXKXERXQKIVQAEGE 846
A +FNI LDDVS+T LSFG E+T + ++ I++A+GE
Sbjct: 240 ARNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGE 299
Query: 847 XEAXXMLGK 873
++ ++G+
Sbjct: 300 AKSAELIGQ 308
Score = 35.1 bits (77), Expect = 0.075
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 420 ISSPTGSKDLQMVNISLRVLSRP 488
+ S +GS+DLQMV I LRVL+RP
Sbjct: 158 VESTSGSRDLQMVKIGLRVLTRP 180
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 280 VEGGHRAIMXNRIGGVQ 330
VEGGHRAI+ NRI G++
Sbjct: 40 VEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 102 bits (245), Expect = 3e-22
Identities = 49/76 (64%), Positives = 64/76 (84%)
Frame = +1
Query: 508 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNII 687
T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI
Sbjct: 274 TIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIA 333
Query: 688 LDDVSLTELSFGXEYT 735
LDDVS+T LSFG E+T
Sbjct: 334 LDDVSITSLSFGKEFT 349
Score = 35.1 bits (77), Expect = 0.075
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 420 ISSPTGSKDLQMVNISLRVLSRP 488
+ S +GS+DLQMV I LRVL+RP
Sbjct: 245 VESTSGSRDLQMVKIGLRVLTRP 267
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 48.0 bits (109), Expect = 1e-05
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +1
Query: 508 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 627
T YR LG ++ E+VL S+ +E LK+VVA++NASQLI R+
Sbjct: 389 TKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 420 ISSPTGSKDLQMVNISLRVLSRP 488
+ S +GS+DLQMV L VL+RP
Sbjct: 364 VESTSGSRDLQMVRPGLGVLTRP 386
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +1
Query: 508 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 660
T+ +G D+K + N+ K VV + +L+ + VS R+E+V
Sbjct: 51 TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
Query: 661 ERAADFNIILDDVSLTELSFGXE 729
ERAA +I++ + +LS+ E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133
>11_02_0089 + 8203056-8203535
Length = 159
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = -2
Query: 294 MTSFHGQHRXGDAISRSADNGYHFETDAKXRWPTFSELPCHV 169
M S HGQ R G A S S D G + A PT PC+V
Sbjct: 1 MASCHGQRRSGRATSSSTDTGIRWH-QAVTGVPTII-APCYV 40
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 541 HHNLFQVVCTLLPSILASGRESTRREMFT--ICKSFEPVGEDILPRSGSDIINDWG 380
+H+ V L+ IL G + ++F IC S P+ E++LPR ++ WG
Sbjct: 273 YHDTSAVTDELVQFILQPGLDPGAVDVFLEFICYSGGPLPEELLPRVKCPVLVAWG 328
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = +3
Query: 333 ARIHRXYALPYTVVSIPQSFMISDPDLGKISSPTGSKDLQMVNISLRVLSRPDANMLG 506
A +H Y PYTV S S D G+IS + SK L N + LS G
Sbjct: 13 AHVHA-YGSPYTVSSSYNSASCDVNDYGRISENSASKHLPPYNSTTYSLSPAQPQSFG 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,250,286
Number of Sequences: 37544
Number of extensions: 372398
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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