Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B05
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   178   5e-45
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   114   7e-26

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  178 bits (433), Expect = 5e-45
 Identities = 97/200 (48%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
 Frame = +1

Query: 277 TVEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSARYLPRLV-QKIYR 453
           TVE GHRAIM NRIGG+   ++ E +HFRIPWFQYP  + Y I      +      K  +
Sbjct: 42  TVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYP--IIYDIRARPNQIRSPTGSKDLQ 99

Query: 454 W*TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQV 633
                        P     +YR LG +++E+VLPSICNEVLK VVAKFNASQLITQRQQV
Sbjct: 100 MVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQV 159

Query: 634 SLLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXXKXE 813
           S+L+R+ L+ERA DFNIILDDVSLTEL+F  +Y+                       K +
Sbjct: 160 SMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQQ 219

Query: 814 RXQKIVQAEGEXEAXXMLGK 873
           + +KIVQAEGE E+  +LG+
Sbjct: 220 KQEKIVQAEGEAESAKLLGE 239



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +3

Query: 417 KISSPTGSKDLQMVNISLRVLSRPDANML 503
           +I SPTGSKDLQMVNI LRVLSRP+   L
Sbjct: 88  QIRSPTGSKDLQMVNIGLRVLSRPNPEHL 116


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  114 bits (275), Expect = 7e-26
 Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 1/202 (0%)
 Frame = +1

Query: 280 VEGGHRAIMXNRIGGVQQHVFTEXMHFRIPWFQYPSHL*YQIPTSARYLPRLV-QKIYRW 456
           V+GG RA++ +R  GV+  V  E  HF IPW Q P  + + I ++ R +  +   K  + 
Sbjct: 33  VDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKP--IIFDIRSTPRAVTTITGSKDLQN 90

Query: 457 *TFPSEYFLDQMPIC*ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVS 636
                       P     +Y  +G DY E+VLPSI NEVLK+VVA+F+A ++ITQR+ VS
Sbjct: 91  VNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVS 150

Query: 637 LLIRRELVERAADFNIILDDVSLTELSFGXEYTXXXXXXXXXXXXXXXXXXXXXXXKXER 816
                 L ERAA F ++LDD+++T L+FG E+T                       +  +
Sbjct: 151 QRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQMK 210

Query: 817 XQKIVQAEGEXEAXXMLGKXWA 882
              +  AEG+ +A  +L K +A
Sbjct: 211 IAAVTTAEGDAQAAKLLAKAFA 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,837
Number of Sequences: 27780
Number of extensions: 326389
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)