Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_B04
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.31
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.94
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 5.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +3
Query: 759 PPXGXXXIPGXSPXXXPPXAPXXXPPXPXXRXXXPXXPPXGGGGGXFPXXPPGGXPP 929
PP P P PP P P P P PP G P PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +2
Query: 725 KKXPPPXXGXXTPPGNXXNPGXFPPXXPPRGPXXVPXPAXXPXXXAXPS-PXXGGGGXXP 901
KK PPP PP + N G PP +P P P A S P G P
Sbjct: 308 KKRPPPP-----PPPSRRNRGK-PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Query: 902 XXPPGGGSPXXG 937
PP +P G
Sbjct: 362 PPPPPRSAPSTG 373
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.10
Identities = 24/77 (31%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Frame = +2
Query: 701 APPPGPXXKKXPP-PXXGXXTPPGNXXNPGXFPPXXPPRGPXXVPXPAXXPXXXAXPSPX 877
A PP P PP P PP + G P P G VP P+ P P P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP---PVPKPS 1204
Query: 878 XGGGGXXPXXPPGGGSP 928
G P PP P
Sbjct: 1205 V---GVPPVPPPSTAPP 1218
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +3
Query: 762 PXGXXXIPGXSPXXXPPXAPXXXPPXPXXRXXXPXXPPXGGGGGXFPXXPPGGXPP 929
P G +P S P AP PP P P P G P P G PP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP-KPAAGVPP 1190
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +2
Query: 734 PPPXXGXXTPPGNXXNPGXFPPXXPPRGPXXVPXPAXXPXXXAXPS----PXXGGGGXXP 901
PPP + + P PP P G VP P+ PS P G P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 902 XXPPGGGSP 928
P +P
Sbjct: 1123 VPKPSVAAP 1131
Score = 26.6 bits (56), Expect = 5.0
Identities = 24/82 (29%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Frame = +2
Query: 701 APPPGPXXKKXPP-PXXGXXTPPGNXXNPGXFPPXXPPR-GPXXVPXPAXXP----XXXA 862
A PP P PP P PP P PP P VP P+ P A
Sbjct: 1110 AVPPVPAPSGAPPVPKPSVAAPP--VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA 1167
Query: 863 XPSPXXGGGGXXPXXPPGGGSP 928
P G P P G P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVP 1189
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +2
Query: 794 PPXXPPRGPXXVPXPAXXPXXXAXPSPXXGGGGXXPXXPPG 916
PP PP VP PA P P+P GG P PPG
Sbjct: 732 PPPPPPA--VIVPTPAPAPIPVPPPAPIM-GGPPPPPPPPG 769
Score = 29.1 bits (62), Expect = 0.94
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = +2
Query: 701 APPPGPXXKKXPPPXXGXXTPPGNXXNPGXFPPXXPPRGPXXVPXPAXXPXXXAXPSPXX 880
+PPP P P P P G PP PP G P P P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP-----PPPAV 785
Query: 881 GGGGXXPXXPPGGGSP 928
GG P P
Sbjct: 786 SAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 807 PPXAPXXXPPXPXXRXXXPXXPPXGGGGGXFPXXPPGGXP 926
P AP PP P PP G G P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 315 PXXLXGGGPXPPKXXXXXGAXXPPPXGGAP 226
P + GG P PP GA PPP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Frame = +2
Query: 668 KGPXXXVFSXXAPPPGPXXKKXPPP---XXGXXTPPGNXXNPGXFPPXXPPRGP 820
K P + P P P PPP G PP G PP PP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 931 PGGXPPGGXXGXXPPPPP 878
P PP G G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 919 PPGGXXGXXPPPPPXGGXXG 860
PP G PPPPP G G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAG 772
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 937 PXPGGXPPGGXXGXXPPPPP 878
P P PPG PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 520 PPXNPXPPVXXGGGXVXPPP 579
PP P PP G G PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.94
Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Frame = +2
Query: 701 APPPGPXXKKXPPPXXGXXTPPGNXXNPGXFPPXXPPRGPXXVPXPAXXPXXXAXPSPXX 880
+P P PP PP P PP P P P P +P
Sbjct: 153 SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVA 212
Query: 881 G-GGGXXPXXPPGGGSP 928
PP G +P
Sbjct: 213 NTSSRPSSFAPPAGHAP 229
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 937 PXPGGXPPGGXXGXXPPPPPXGG 869
P P PPG PPPPP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/50 (26%), Positives = 15/50 (30%)
Frame = +3
Query: 732 SPPXXXGGXPPXGXXXIPGXSPXXXPPXAPXXXPPXPXXRXXXPXXPPXG 881
+PP PP +P P P PP P P P G
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 770 NXXNPGXFPPXXPPRGPXXVPXPAXXPXXXAXPSP 874
N P P PPR P VP P P+P
Sbjct: 577 NYSEPNASPSVIPPRVPTPVPGRTLSPKPTRIPTP 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,576
Number of Sequences: 5004
Number of extensions: 27981
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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