Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_B04
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +2

Query: 692 SXXAPPPGPXXKKXPP-PXXGXXTPPGNXXNPGXFPPXXPP 811
           S  AP P P   + P  P  G    P     PG  PP  PP
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG-PPGAPP 56



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 818 PXXVPXPAXXPXXXAXPSPXXGGGGXXPXXPPG 916
           P   P P   P      SP     G  P  PPG
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
 Frame = -1

Query: 937 PXPG-GXPPGGXXGXXPPPPP 878
           P P  G PPGG  G  P   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 513  PXPPPXPPAPG 545
            P PPP PP+ G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,358
Number of Sequences: 438
Number of extensions: 8068
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)