Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A24
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   127   1e-29
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    29   4.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  127 bits (306), Expect = 1e-29
 Identities = 66/118 (55%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
 Frame = +2

Query: 269 VQDKNKYNTPKYXLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 448
           VQDKNKYNTPKY LIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAA
Sbjct: 38  VQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAA 97

Query: 449 AYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVXNGPXA-FRCYLDVGLARTT 619
           AY+T                           +YNVE    G  A F+  LD+GLARTT
Sbjct: 98  AYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE--EEGDRAPFKAVLDIGLARTT 153



 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +1

Query: 157 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 264
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRL 36


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 581 FRCYLDVGLARTTXWCS-CLWSYEGCCWXVASMFLIPSKXFLPCDA 715
           F CY    L+R    CS C+  +E C W  A MF    K +  CD+
Sbjct: 38  FPCY---SLSRDNYTCSACIQYHESCAWCGAPMF-DEKKPYARCDS 79


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 581 FRCYLDVGLARTTXWCS-CLWSYEGCCWXVASMFLIPSKXFLPCDA 715
           F CY    L+R    CS C+  +E C W  A MF    K +  CD+
Sbjct: 38  FPCY---SLSRDNYTCSACIQYHESCAWCGAPMF-DEKKPYARCDS 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,390
Number of Sequences: 27780
Number of extensions: 316552
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)