Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A23
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    30   0.40 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   8.6  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   8.6  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 706 LIKLFFLQTFVLLIIMMMKQFPLHVTVFC 620
           L+++F L T  +L  +   QFP+HVT FC
Sbjct: 104 LVQIFDLSTRSILRALDAHQFPVHVTQFC 132


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 421 DWEIVIARTVTRLDRDTLNED*LQKNSPFNFNHSDVPLSELN 546
           +WE+V    ++R   +T   D L++   FN++H+ + + ELN
Sbjct: 624 EWELV--EVISRRVLNTSEND-LKRKKKFNWHHTSLGVLELN 662


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 713 LLLDKIILLTNFRVINNYDDETIPTSRYCVLWHL 612
           L+  K + + ++  I  YD+ T+    Y   WHL
Sbjct: 69  LIQSKHLSVDSWSSITKYDNYTVENESYAKAWHL 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,681
Number of Sequences: 5004
Number of extensions: 61486
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)