Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A23
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0504 - 19771191-19772134,19772210-19774892                       29   5.2  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    29   5.2  
12_01_0608 - 5013076-5013489,5014698-5015228,5015632-5016005,501...    29   6.8  
02_05_1127 + 34292894-34293284,34293948-34295443                       29   6.8  
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   9.0  

>12_02_0504 - 19771191-19772134,19772210-19774892
          Length = 1208

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = +3

Query: 189  NSSVVSVCDLTLIR-YSLFSCCNI 257
            +S ++S+ DLT +R ++LFSCCNI
Sbjct: 976  DSVLMSLQDLTSLRSFTLFSCCNI 999


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 256 MLQHENNEYLINVKSHTDTTEL 191
           ++++EN  +L+NVK+H DT  L
Sbjct: 260 LVENENQAFLLNVKNHLDTLSL 281


>12_01_0608 -
           5013076-5013489,5014698-5015228,5015632-5016005,
           5016389-5016637,5016942-5017047
          Length = 557

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 56  PTAGGGGSFSLAPAYKTSLRCILFIGMFVPT 148
           P  GG G++S AP     L+C +   + VPT
Sbjct: 347 PNTGGMGAYSPAPIVTEKLKCKVMESIIVPT 377


>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 126 KRMQRSDVLYAGARENDPPPPAV 58
           +R  R DV  AG R +DP PPAV
Sbjct: 171 RRPGRGDVPLAGVRPHDPLPPAV 193


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 676 RKFVRRIILSSSNAAPASSMKR*TLKIAYGREIQRES 786
           R   RR   SS+NAAP+SS +R T   A G+ ++R S
Sbjct: 153 RSRCRRDASSSANAAPSSSQRRQTASAA-GKILRRSS 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,990,618
Number of Sequences: 37544
Number of extensions: 387464
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)