Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A23
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    28   0.10 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 781 PVVSLVHTQSSTFIFSLKTPEPHYYLIKLFFLQTFVLLI 665
           P   L+H      ++    P  HY L  L+ L TF+ L+
Sbjct: 26  PAEELIHIPEHWLVYPEPNPSLHYLLALLYILFTFLALL 64


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 44  LSRFPTAGGGGSFSLAPAYK 103
           L +  T GG G F +AP +K
Sbjct: 41  LGQMLTVGGLGVFKIAPLFK 60


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 69  EADRFPSLPHTKHRYV 116
           + +RF SLP+ K++Y+
Sbjct: 311 QRNRFSSLPYYKYKYL 326


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 69  EADRFPSLPHTKHRYV 116
           + +RF SLP+ K++Y+
Sbjct: 311 QRNRFSSLPYYKYKYL 326


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 91 SEGKRSASSGGREATQNLK 35
          + G+RS SSG R + +N K
Sbjct: 34 ASGQRSVSSGFRSSLRNYK 52


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 664 IMMMKQFPLHVTVFCGTY 611
           I+ ++Q P+ V V+CG +
Sbjct: 340 IINIEQIPVPVPVYCGNF 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,392
Number of Sequences: 438
Number of extensions: 4699
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)