Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A22
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       33   0.23 
04_03_0380 - 15150814-15152304                                         32   0.71 
04_03_0348 + 14735581-14737071                                         32   0.71 
06_03_0335 + 19662933-19663334,19663358-19664023                       31   1.2  
01_01_0601 - 4476261-4476728                                           29   5.0  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = +3

Query: 537 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRXTCPP-FSLRE 707
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R    P F  R 
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72

Query: 708 AWRFLIAHAVGISVRCRSFAP 770
           A      + + + +   +F P
Sbjct: 73  AEGLFGLNGIEVGIEGDNFTP 93


>04_03_0380 - 15150814-15152304
          Length = 496

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 715 RHASRREKGGQVXR*AAGSEQESARGSXPGGNA 617
           R A   EKG ++ R AAG ++ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472


>04_03_0348 + 14735581-14737071
          Length = 496

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 715 RHASRREKGGQVXR*AAGSEQESARGSXPGGNA 617
           R A   EKG ++ R AAG ++ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472


>06_03_0335 + 19662933-19663334,19663358-19664023
          Length = 355

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = -2

Query: 781 HSPAGANDLHRTEIPTA*AMRKRHASRREKGGQVXR*AAGSEQESARGSXPGGNA 617
           H P  A  LH   +P A   R+R A RR   G+V   AA +      G+  GG A
Sbjct: 142 HRPLAARPLHVPGVPRAPGARRRAAQRRR--GRVAAAAAAAPVRPVAGAAHGGVA 194


>01_01_0601 - 4476261-4476728
          Length = 155

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = -2

Query: 829 PDKXPPVGXNRGXXXXHSPAGANDL-HRTEIPTA*AMRKRHASRREKGGQVXR*AAGSEQ 653
           PD+  P+G  R        AGA    HR           RH  RR    +  R   GSE 
Sbjct: 18  PDRPKPIGRLRRAVASTGTAGAGPTDHRGRRRAVTGDGGRHRERRRAAREAARGNGGSEG 77

Query: 652 ESARGSXPG 626
           E   G+  G
Sbjct: 78  EGGGGAHRG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,868,588
Number of Sequences: 37544
Number of extensions: 458114
Number of successful extensions: 1231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)