Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A19
         (1162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.45 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 705 GPPPPPPPXXXFXXXGGPP 761
           G PPPPPP       G PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect(2) = 0.45
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 705 GPPPPPPP 728
           GPPPPPPP
Sbjct: 774 GPPPPPPP 781



 Score = 22.6 bits (46), Expect(2) = 0.45
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 711 PPPPPPXXXFXXXGG 755
           PPPPPP       GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 705 GPPPPPPPXXXFXXXGGPP 761
           G PPPPPP   F     PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPP 25


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 708 PPPPPPPXXXFXXXGGPP 761
           PPPPPPP   F      P
Sbjct: 308 PPPPPPPSNDFWKDSNEP 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,208
Number of Sequences: 5004
Number of extensions: 13516
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)