Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_A19
(1162 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 1.2
02_02_0359 - 9390175-9390416,9390924-9391044,9391069-9391410,939... 25 1.7
08_01_0060 - 413088-413999 25 2.3
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 27 2.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.5
04_03_0690 + 18751601-18753667 25 4.6
03_06_0599 + 34984869-34985319,34986581-34987563 25 4.7
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 5.3
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 29 7.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 24 9.6
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 25.8 bits (54), Expect(2) = 1.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 708 PPPPPPPXXXFXXXGGPP 761
PPPPPPP PP
Sbjct: 602 PPPPPPPPPILPNRSVPP 619
Score = 24.2 bits (50), Expect(2) = 1.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 693 FXXXGPPPPPPP 728
F PPPPPPP
Sbjct: 561 FSPPPPPPPPPP 572
>02_02_0359 -
9390175-9390416,9390924-9391044,9391069-9391410,
9392400-9392759
Length = 354
Score = 25.4 bits (53), Expect(2) = 1.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 708 PPPPPPPXXXFXXXGGPP 761
PPPPPPP PP
Sbjct: 37 PPPPPPPPPPPSQPSAPP 54
Score = 24.2 bits (50), Expect(2) = 1.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 693 FXXXGPPPPPPP 728
F PPPPPPP
Sbjct: 34 FLLPPPPPPPPP 45
>08_01_0060 - 413088-413999
Length = 303
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 708 PPPPPPPXXXF 740
PPPPPPP F
Sbjct: 33 PPPPPPPPLPF 43
Score = 24.2 bits (50), Expect(2) = 2.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 693 FXXXGPPPPPPP 728
F PPPPPPP
Sbjct: 26 FDQPPPPPPPPP 37
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 27.5 bits (58), Expect(2) = 2.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 708 PPPPPPPXXXFXXXGG 755
PPPPPPP + GG
Sbjct: 79 PPPPPPPFEYYPAVGG 94
Score = 21.4 bits (43), Expect(2) = 2.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 693 FXXXGPPPPPP 725
F PPPPPP
Sbjct: 75 FAAVPPPPPPP 85
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 5.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 705 GPPPPPPPXXXFXXXGGPP 761
GP PPPPP GGPP
Sbjct: 367 GPGPPPPPGAAGRGGGGPP 385
Score = 26.2 bits (55), Expect(2) = 4.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 705 GPPPPPPP 728
GPPPPPPP
Sbjct: 348 GPPPPPPP 355
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +3
Query: 708 PPPPPPPXXXFXXXGGP 758
PPPPPP GP
Sbjct: 350 PPPPPPAAPAAPRPPGP 366
>04_03_0690 + 18751601-18753667
Length = 688
Score = 25.0 bits (52), Expect(2) = 4.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 708 PPPPPPPXXXF 740
PPPPPPP F
Sbjct: 86 PPPPPPPRGAF 96
Score = 23.0 bits (47), Expect(2) = 4.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 705 GPPPPPPP 728
GP PPPPP
Sbjct: 83 GPTPPPPP 90
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 25.0 bits (52), Expect(2) = 4.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 708 PPPPPPPXXXFXXXGGPP 761
PPPPPPP PP
Sbjct: 406 PPPPPPPHQRETPSPSPP 423
Score = 23.0 bits (47), Expect(2) = 4.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 705 GPPPPPPP 728
GP PPPPP
Sbjct: 395 GPAPPPPP 402
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.5 bits (63), Expect = 5.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 726 GGGGGGAXPXXXXPPP 679
GGGGGGA P PPP
Sbjct: 34 GGGGGGAGPTPPPPPP 49
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 760 GGPPXXXKXXXGGGGGGGP 704
GGPP GGGGGG P
Sbjct: 164 GGPPPPAPTSGGGGGGGSP 182
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 24.2 bits (50), Expect(2) = 9.6
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +3
Query: 708 PPPPPPPXXXFXXXGGP 758
PPPPPPP P
Sbjct: 48 PPPPPPPPQTLAAAASP 64
Score = 22.6 bits (46), Expect(2) = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 705 GPPPPPPP 728
G PPPPPP
Sbjct: 46 GVPPPPPP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,582,041
Number of Sequences: 37544
Number of extensions: 370597
Number of successful extensions: 16495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9969
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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