Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A18
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    27   3.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   4.6  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   4.6  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   6.1  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   6.1  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   6.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   6.1  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.1  

>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 179 RDGSNNFRVNSINVHTYEDYYDHLGFQYN*SVQNTYMASKQKSITSVPWSFTKRITR 349
           R  S      S + +T     DH G  +  S      ++K  S+ SVP   TKR+ R
Sbjct: 28  RSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTSKRGRSTKAGSVHSVPMKRTKRVRR 84


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 716 AQPSPCEVIPTMYPFQSTPVPESPLQVSLSPSPYKQNMSGVRLR 585
           AQ SP  ++PT+ P Q+T + ++  +V+  PS    N +    R
Sbjct: 445 AQQSPPVLLPTLPPIQTTTI-QTSREVAPPPSSINSNRAASPFR 487


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 428 FWLIMENGCLSMKKTLLSVAGDGHSMEGQYHSV 526
           FWL+    CLS   T+++ A D    EG  HS+
Sbjct: 133 FWLLTAEACLSQSMTIVT-AYDTLGEEGLLHSL 164


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 275 QNTYMASKQKSITSVPWSFTKRITRQL 355
           +N+++ SK + + S+P +  K+I RQL
Sbjct: 65  ENSWVTSKNEKLKSLPPALKKKIERQL 91


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 503 YCVHPQPLTIKFFSY-LDIHFPLSTRIPF 420
           YC+ PQP    F+ Y  D +    +R+PF
Sbjct: 444 YCIEPQPYGTDFYQYNYDPNTRKFSRVPF 472


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 421 KGILVDNGKWMSKYEKNFIVSGWGWTQYG-GPISQRGLLTTHLGY 552
           +GI VD    + K+EKN+++S  G    G  PI +    + HL +
Sbjct: 77  EGISVDQSLQVPKFEKNWLISPPGSPPVGWEPIVEESPNSQHLAH 121


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 676 GYIVGITSHGDGCAKKYKPSVYTNVW 753
           G I GIT H    A+KY   + +N W
Sbjct: 743 GSISGITKHKKKAARKYVSELLSNSW 768


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 668 STPVPESPLQVS-LSPSPYKQNMS 600
           STPVP SP+ +S   PSP    +S
Sbjct: 313 STPVPMSPISISPAKPSPQSPKLS 336


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 713 QPSPCEVIPTMYPFQSTPVPESPL 642
           +P P E +P   P    PVPE PL
Sbjct: 112 EPVPEEPLPGEPPLPDEPVPEEPL 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,763
Number of Sequences: 5004
Number of extensions: 81556
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)