Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A17
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    36   0.006
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    36   0.006
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    35   0.018
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    33   0.054
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    28   2.0  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   3.5  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   8.1  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 159 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 290
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 159 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 290
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 153 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 293
           K  + PKR MSA++ +    R K+K DNP     ++    G+ W+ +
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 165 KPKRPMSAYLLWLNSARSKIKDD--NPGLKVTEIAKKAGEIWRSMY--DKSEWXXXXXXX 332
           +PKRP SAY L+  + RS+IK+        V E+ K   E W S+   D+  +       
Sbjct: 116 QPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKL 175

Query: 333 XXQYIVDLESFNAN 374
              Y  ++ ++NA+
Sbjct: 176 REAYEEEMAAYNAS 189


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 389 REKKENPKTREESETGAKNKESETGRR 469
           ++KK  P  R+E  T  K K+   GRR
Sbjct: 598 KKKKSKPVNRDEDSTSGKKKQVTQGRR 624


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 KWRRSRREKKENPKTREESETGAKNKESETGR 466
           +W++  RE KE  K +EE E    ++ S TGR
Sbjct: 435 EWKKDERE-KEKRKRQEEEEENNLDRTSWTGR 465


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 124 QKRVIFVTKAGEREMRTKHRCSCSPSKS 41
           Q  V++ T +GER +R  + C    SKS
Sbjct: 591 QTAVLYTTPSGERRVRVVNYCCAVTSKS 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,223
Number of Sequences: 5004
Number of extensions: 50212
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)