Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_A16
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 230 2e-61
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 2.8
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.8
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 4.9
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 6.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 6.4
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 8.5
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 8.5
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 8.5
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 230 bits (563), Expect = 2e-61
Identities = 100/184 (54%), Positives = 146/184 (79%)
Frame = +1
Query: 205 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 384
M EAR ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1 MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60
Query: 385 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 564
RCDRNI++G+NL ++SK+L+CA ++D VT+KA+D + + VFES +++SDY++KLM+
Sbjct: 61 RCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD 120
Query: 565 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANV 744
+D EHLGIP+ EY TI MP++EF RI RDL +S+ I+ +KEGV+FS GDIG+ +
Sbjct: 121 IDQEHLGIPDIEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGST 180
Query: 745 KLAQ 756
L Q
Sbjct: 181 TLKQ 184
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 821 TFACQYLNYFPKXTXLSPQVXXSMSANXXL 910
TF+ +YL F K T L+ +V SMS + L
Sbjct: 206 TFSLKYLAQFTKATPLATRVTLSMSNDVPL 235
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 436 SLTCCLDSCPLRCSYRSGTC 377
SL+C DSC + C GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 154 LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 267
L + N+ + IH I+ +EAR++ IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +1
Query: 316 QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNAD 495
+ +D+SH LV A F+ YRC + SMG+ G + + D+ ++
Sbjct: 957 RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETT 1013
Query: 496 NVTFVFESPNQEKVSDYE 549
+ FES + D E
Sbjct: 1014 TASSKFESDDSVDTEDEE 1031
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 568 DLEHLGIP-ETEYSCTIRMPSS 630
+L +G+P E EY C R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +1
Query: 46 FCPLPNVERLRTYCFVIYFTQLF*FVCKLGVADCLALLLIFNKIIEVI 189
F PN+E+L C+ Y Q F L VAD LI I VI
Sbjct: 716 FLSFPNIEQLLDDCYANYVMQRF-----LNVADESQKFLILRSISHVI 758
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 639 SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 508
++F W + + NT + + Q+ +LH++++ F+L KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 707 SSRQQATSAQRTSSWPRPLLLTKRRRQSSLKWKSPSL 817
S R+ TS +RT P +L ++ + ++L +PS+
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 707 SSRQQATSAQRTSSWPRPLLLTKRRRQSSLKWKSPSL 817
S R+ TS +RT P +L ++ + ++L +PS+
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 241 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 351
K+V + D+LTQ T C D+ +++++ L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,637
Number of Sequences: 5004
Number of extensions: 67325
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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