Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A15
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.43 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 700 SPPXXGGGPPXGGXXXXXGXPPGXPP 777
           SPP    GPP GG       PPG PP
Sbjct: 38  SPPNPSQGPPPGG-------PPGAPP 56



 Score = 25.8 bits (54), Expect = 0.56
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = -3

Query: 903 PXXXKPXPRGXXXKXPPPPPXGXXGXXGSPXPXXGGXRXGPPGGXPXGXP 754
           P    P P+    + P  P  G       P P  G    GPPG  P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRG-----SPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 626 PNPXXGPVXGFXPXGPP 676
           PNP  GP  G  P  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 749 PXGXPXGXPPGGPXLXPP 802
           P     G PPGGP   PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 782 PRGGXPGGNPXXXXXPPXGGPP 717
           P+    G  P     PP GGPP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = +1

Query: 478 PXPPPXXPXPRXWGGGXXXP---PPRGGXXGXPPNR 576
           P P P         G    P   PP GG  G PP++
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/39 (28%), Positives = 11/39 (28%)
 Frame = -2

Query: 625 GPXXXPXXKRXXPXXPPDXGXXPXPPPXGGXTXPPPPXP 509
           GP   P      P           PPP G    PP   P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 755 GXPXGXPPGGPXLXPP 802
           G P G PPG P    P
Sbjct: 45  GPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 546  PXGGXPXPPPPXP 508
            P  G P PPPP P
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 883  PXGGXXKXPPPPP 845
            P  G  + PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 531  PXPPPPXPGAG 499
            P PPPP P +G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,217
Number of Sequences: 438
Number of extensions: 12091
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)