Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A14
         (1103 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    31   1.5  
Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -3

Query: 990 GGGGGGGXXKXXXXXFFXXKKKKKKXXPXGGXEEKKXXKGGGGXXXXXXGXXGGRXKKK 814
           GGGGGGG             + + +    GG   +    GGGG      G  GGR + +
Sbjct: 220 GGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGGGGRRRSR 278


>Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical
           protein F36G9.13 protein.
          Length = 917

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 914 FFFFFFXXKKKXXXXXXXXPPPPPPP 991
           FFF F   +++        PPPPPPP
Sbjct: 828 FFFRFVARREQSAQHSVKVPPPPPPP 853



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 914 FFFFFFXXKKKXXXXXXXXPPPPPPP 991
           FFFF F  +++         PPPPPP
Sbjct: 827 FFFFRFVARREQSAQHSVKVPPPPPP 852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,691,513
Number of Sequences: 27780
Number of extensions: 148021
Number of successful extensions: 2487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2981737830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)