Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_A12
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0218 + 18219956-18220555 33 0.30
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
12_01_0816 + 7502669-7503145 29 4.9
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 4.9
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 6.5
08_01_0156 - 1233431-1233925 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.6
03_04_0061 - 16949038-16950006 28 8.6
>06_03_0218 + 18219956-18220555
Length = 199
Score = 33.1 bits (72), Expect = 0.30
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -3
Query: 808 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 629
NGG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 81 NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136
Query: 628 LVS 620
S
Sbjct: 137 RAS 139
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 528 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 686
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 827 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 696
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 881 PVAISRSTGXTQDDSYRIRRSGRAERGVRAHSPAWSERPTP 759
P S T +D S+ +AH+PAWS P P
Sbjct: 812 PTLTSEETHTAEDKSFSFEVGAPLNITEKAHAPAWSPLPRP 852
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 771 FAPSWAVCTNPPFSPTAAPYPVTIVLSXP 857
F P AV PP P AAP PV + + P
Sbjct: 67 FVPFHAVGPPPPPQPRAAPPPVAVAMGSP 95
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 781 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 608
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 607 RVSPPLT 587
R SP ++
Sbjct: 149 RASPTVS 155
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 308 NESAN---ARGEAVCVLGALPLPRSLTRCAR 391
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 736 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 635
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 610 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 726
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,376,527
Number of Sequences: 37544
Number of extensions: 560117
Number of successful extensions: 1868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1865
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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