Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A10
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    36   0.006
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    32   0.093
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    29   0.66 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   1.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   1.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   1.1  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    28   1.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.7  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   4.6  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.6  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   6.1  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    26   8.1  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
 Frame = +2

Query: 284  MANLESEIKDLKEKNNDLVQKVQYW--KMTAAQRENEKLSLMKEINELRLKLSKLRSTGG 457
            ++NLE EI +L+     LVQ+VQ    ++ A +  +     ++  +E+    S+L ST  
Sbjct: 1523 ISNLEKEIHELRSDKEGLVQQVQNLSAELAALREHSPTQGSLENADEIARLRSQLESTKQ 1582

Query: 458  LQAQNLDTAIQAASEKALAHLVRASGEIAHTIDLAKAYMRDRQE 589
               +  +T I AA  + +A   +   E+ + ++     +++ +E
Sbjct: 1583 YYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEE 1626



 Score = 32.3 bits (70), Expect = 0.093
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +2

Query: 290 NLESEIKDLKEKNNDLVQKVQYWKMTAAQRENEK-LSLMKEINELRLKLSKLRSTGGLQA 466
           N E E++ L +KN+ +++    W     Q  N+K LSL +E +  + +LS   S   L+ 
Sbjct: 187 NYEFELQKLTQKNS-ILENNNTWLSRELQGVNDKLLSLHQEASLEKSQLSSQLSDAVLEK 245

Query: 467 QNLDTAIQAASEKALAHLVRASGEIAHTIDLAKAY 571
             L   + + S++     +R    +A   ++ K Y
Sbjct: 246 DALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQY 280



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 293  LESEIKDLKEKNNDLVQKVQYWKMTAAQRENEKLSLMKEINELRLKLSKLRSTGGLQAQN 472
            LE E ++L+ K  +  ++   +K        E  +L KE+ +   K ++L +    + +N
Sbjct: 1364 LEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCEN 1423

Query: 473  L 475
            L
Sbjct: 1424 L 1424


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
 Frame = +2

Query: 290  NLESEIKDLKEKNNDLVQKVQYWKMTAAQRENEKLSLMKEINELRLKLSKLRSTGGLQAQ 469
            N  + + + KEK+ +L++  Q WK+  A +++ ++      N LRLK S   +     AQ
Sbjct: 557  NQIANLLENKEKSRELLEAWQEWKILNA-KDDTRIGTTNS-NLLRLKRSNRTA-----AQ 609

Query: 470  NLDTAIQAASEKALAHLVRASGEIAHTIDLAKAYMRDRQELEASSPRWSAISGTPSTDKA 649
                ++    E+A AH   +    + +I+LA    R      A++P W       S   A
Sbjct: 610  T--ASVWNRIERAAAHDGPSLSAPSSSINLANITSRPTNSSAANTPSWGVRKARASALNA 667

Query: 650  ---ERIHRVPPTIMGGQSIQPVVALSRTLLNTSNPRLTSRSPNQN 775
               E    +PP+     S+Q     +R + +  +   TS + N N
Sbjct: 668  RSEEDFPALPPSTSKRISVQLGKKQARPVDSWGSTPNTSSNRNSN 712


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 617 AISGTPSTDKAERIHRVPPTIMGGQSIQPVVALSRTLLNTSNPRLTSRSPNQNRNVSER 793
           AIS TP   +       PP+ +GG S Q  V L     + S   +   SP +    S++
Sbjct: 127 AISNTPIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDK 185


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 376  LSCRHLPVLHLLDQVIVFLLQ 314
            L C  LPV H L+Q+I+ LLQ
Sbjct: 2108 LRCGKLPVTHSLEQIILLLLQ 2128


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 512  PMPFHWQPG*LYPSSALVSHRC 447
            P  FH++PG L PS   V H C
Sbjct: 1156 PTAFHYRPGLLQPSQTSVQHCC 1177


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 512  PMPFHWQPG*LYPSSALVSHRC 447
            P  FH++PG L PS   V H C
Sbjct: 1156 PTAFHYRPGLLQPSQTSVQHCC 1177


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 587 ELEASSPRWSAISGTPSTDKAERIHRVPPTIMGGQSIQPV 706
           E  +S+P+ S+ S TP    ++    +PP  +G  ++QP+
Sbjct: 551 ESASSTPKISSCSSTPKPFNSKLRAHLPPLSIGSPAVQPL 590


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
 Frame = +2

Query: 284  MANLESEIKDLKEKNNDLVQKVQYWKMTAAQRENEKL-------SLMKEINELRLKLS 436
            +AN+E    + K++N +L ++    K    + E+E L       +L+ E NEL+ KLS
Sbjct: 889  LANIEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKVETLLSEQNELKEKLS 946


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 591 WKHHHHVGVQSVVLRVQIKLRGSTAYHQQ 677
           + HHHH G+ +  + V + +  +TA+ ++
Sbjct: 27  YHHHHHAGLNASNITVGVNVTNTTAFSKR 55


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/48 (25%), Positives = 29/48 (60%)
 Frame = +2

Query: 305 IKDLKEKNNDLVQKVQYWKMTAAQRENEKLSLMKEINELRLKLSKLRS 448
           +++LKE+  + +++++  +    + E   L L+  IN+LR K  +L++
Sbjct: 22  LQNLKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKA 69


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 296 ESEIKDLKEKNNDLVQKVQYWKMTAAQRENEKLSLMKEINELRLKLSKL 442
           + +IK+LKE+ NDL    +  K  A   E ++  + K    L    SKL
Sbjct: 164 DKKIKELKERINDLTYDYETLKANADDSEGKQTLVSKREAALEEFQSKL 212


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 281 SMANLESEIKDLKEKNNDLVQKVQYWKMTAAQRENEKL 394
           S+  +E E++D  E  ND  + +QY+    +Q  +E L
Sbjct: 57  SLNEMEVEMEDENENENDEQEAIQYYINVESQDADETL 94


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 485 IQAASEKALAHLVRASGE---IAHTIDLAKAYMRDRQELEASSPRWSAISGT 631
           ++ AS  A  HL +A      +  T+ + K+Y      +E  SPR+  I GT
Sbjct: 43  VETASFLASLHLTKAEEVPDILMQTVQILKSYSTPIANIEMVSPRFVDIVGT 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,965
Number of Sequences: 5004
Number of extensions: 62849
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)