Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A09
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    97   4e-21
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    97   4e-21
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    59   1e-09
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   3.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   6.6  

>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 44/97 (45%), Positives = 64/97 (65%)
 Frame = +3

Query: 99  KTRSSRAGLHFPVGRIHKILRNGNYAPRIGSGXXXXXXXXXXXXXXXXXXXXXXXXKEMK 278
           ++RS++AGL FPVGR+H++LR GNYA R+G+G                        ++ K
Sbjct: 17  QSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76

Query: 279 KTRVIPRHILFAIKNDEELSRMMTGVTISQGGVLPAI 389
           KTR+IPRH+  AI+NDEEL++++  VTI+QGGV+P I
Sbjct: 77  KTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNI 113


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 44/97 (45%), Positives = 64/97 (65%)
 Frame = +3

Query: 99  KTRSSRAGLHFPVGRIHKILRNGNYAPRIGSGXXXXXXXXXXXXXXXXXXXXXXXXKEMK 278
           ++RS++AGL FPVGR+H++LR GNYA R+G+G                        ++ K
Sbjct: 17  QSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76

Query: 279 KTRVIPRHILFAIKNDEELSRMMTGVTISQGGVLPAI 389
           KTR+IPRH+  AI+NDEEL++++  VTI+QGGV+P I
Sbjct: 77  KTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNI 113


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
 Frame = +3

Query: 75  SKSTHRKNKTRSSRAGLHFPVGRIHKILR-NGNYAPRIGSGXXXXXXXXXXXXXXXXXXX 251
           SK   R   + S+RAGL FPVGR+ + L+       R+G+                    
Sbjct: 48  SKIGERGQMSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLEL 107

Query: 252 XXXXXKEMKKTRVIPRHILFAIKNDEELSRMMTGVTISQGGVLPAI 389
                K++K  R+ PRH+  AI+ DEEL  ++   TI+ GGVLP I
Sbjct: 108 AGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAGGGVLPHI 152


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 196 PRYTSQRLWNTSPP 237
           P YTSQRL++T+PP
Sbjct: 844 PIYTSQRLYDTTPP 857


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = -2

Query: 219  EPLRGISGLRNRSWERSCRF*GS----CVSCPRGSEGRH 115
            EP+ GI+ L    WE+ C   G+    CVS P      H
Sbjct: 947  EPVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPNSGLTSH 985


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,709
Number of Sequences: 5004
Number of extensions: 42427
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)