Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_A02
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 210 2e-55
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 35 0.013
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 34 0.031
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 33 0.054
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 31 0.22
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 29 1.2
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 2.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 2.0
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 2.7
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 27 2.7
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 6.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 6.2
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 210 bits (513), Expect = 2e-55
Identities = 96/172 (55%), Positives = 126/172 (73%)
Frame = +2
Query: 233 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 412
+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39 KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEME 98
Query: 413 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 592
D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 99 DGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPY 158
Query: 593 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGXPIN 748
F+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +G PIN
Sbjct: 159 FVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPIN 210
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ E +L VGYDDI G + +A I+E+VELPL P LF +IG+
Sbjct: 211 REDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGI 255
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ + G K + IKE++ELP+ P LF ++G+
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGI 176
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P L+ +G+
Sbjct: 190 YADIGGLESQIQEIKEAVELPLTHPELYEEMGI 222
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.054
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y D+ G + + ++E+VELPL P F +G+
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGI 210
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 31.1 bits (67), Expect = 0.22
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
+ + + G + + ++E++ELPL P LF +G+
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGI 163
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y D+ G ++E VELPL L+ IG+
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGI 165
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 548 QLNHQLAVCGLV---FHISLKDTERWI 477
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -3
Query: 548 QLNHQLAVCGLV---FHISLKDTERWI 477
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLF 867
V +DDI G + +++ ++LPL P LF
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 772 NAVGYDDIXGXXKXLAXIKEMVELPLXXPSLF 867
+++ ++ + G + +KEMV LPL P +F
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIF 292
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 518 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 408
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLF 867
V +DDI G +KE V LP+ P LF
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 243 DPTVSLSKKQSAMTTQSWH-FHRPKW 317
DP ++ + Q + T+SWH FH +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE E+ N V + DI G + +KE VE PL F +GV
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGV 579
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLF 867
++ I G + +KEMV LPL P +F
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVF 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,771
Number of Sequences: 5004
Number of extensions: 65485
Number of successful extensions: 193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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