Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_A02
(886 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 284 3e-76
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 284 3e-76
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 284 3e-76
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 284 3e-76
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 281 2e-75
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 209 1e-53
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 66 2e-10
L38810-1|AAC41735.1| 406|Homo sapiens thyroid receptor interact... 37 0.11
D44467-1|BAA07919.1| 406|Homo sapiens 26S proteasome subunit p4... 37 0.11
BC002367-1|AAH02367.3| 406|Homo sapiens proteasome (prosome, ma... 37 0.11
BC001932-1|AAH01932.1| 406|Homo sapiens proteasome (prosome, ma... 37 0.11
AF035309-1|AAB88187.1| 280|Homo sapiens protein ( Homo sapiens ... 37 0.11
AB209036-1|BAD92273.1| 345|Homo sapiens proteasome 26S ATPase s... 37 0.11
D78275-1|BAA11338.1| 389|Homo sapiens proteasome subunit p42 pr... 36 0.26
CR456709-1|CAG32990.1| 389|Homo sapiens PSMC6 protein. 36 0.26
BT006843-1|AAP35489.1| 389|Homo sapiens proteasome (prosome, ma... 36 0.26
BC005390-1|AAH05390.1| 389|Homo sapiens proteasome (prosome, ma... 36 0.26
AF006305-1|AAB61616.1| 389|Homo sapiens 26S proteasome regulato... 36 0.26
L02426-1|AAA35484.1| 440|Homo sapiens 26S protease (S4) regulat... 32 3.2
CR457044-1|CAG33325.1| 440|Homo sapiens PSMC1 protein. 32 3.2
BT009826-1|AAP88828.1| 440|Homo sapiens proteasome (prosome, ma... 32 3.2
BC073818-1|AAH73818.1| 440|Homo sapiens proteasome (prosome, ma... 32 3.2
BC067741-1|AAH67741.1| 440|Homo sapiens proteasome (prosome, ma... 32 3.2
BC016368-1|AAH16368.1| 440|Homo sapiens proteasome (prosome, ma... 32 3.2
BC000512-1|AAH00512.1| 440|Homo sapiens proteasome (prosome, ma... 32 3.2
AK222668-1|BAD96388.1| 440|Homo sapiens proteasome 26S ATPase s... 32 3.2
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 284 bits (696), Expect = 3e-76
Identities = 127/171 (74%), Positives = 148/171 (86%)
Frame = +2
Query: 233 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 412
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 413 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 592
DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 593 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGXPI 745
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+G PI
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPI 189
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 191 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 284 bits (696), Expect = 3e-76
Identities = 127/171 (74%), Positives = 148/171 (86%)
Frame = +2
Query: 233 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 412
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 413 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 592
DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 593 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGXPI 745
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+G PI
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPI 189
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 191 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 284 bits (696), Expect = 3e-76
Identities = 127/171 (74%), Positives = 148/171 (86%)
Frame = +2
Query: 233 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 412
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 413 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 592
DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 593 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGXPI 745
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+G PI
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPI 189
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 191 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 284 bits (696), Expect = 3e-76
Identities = 127/171 (74%), Positives = 148/171 (86%)
Frame = +2
Query: 233 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 412
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 413 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 592
DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 593 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGXPI 745
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+G PI
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPI 189
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 191 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 281 bits (689), Expect = 2e-75
Identities = 126/171 (73%), Positives = 147/171 (85%)
Frame = +2
Query: 233 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 412
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 413 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 592
DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 593 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGXPI 745
F+EAYRPI + D F+VRGGMRAVEFKVVET PSP+CIVAPDTVIHC+G PI
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCIVAPDTVIHCEGEPI 189
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 191 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 209 bits (510), Expect = 1e-53
Identities = 92/125 (73%), Positives = 103/125 (82%)
Frame = +2
Query: 371 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 550
+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62
Query: 551 GLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHC 730
G+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC
Sbjct: 63 GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 122
Query: 731 DGXPI 745
+G PI
Sbjct: 123 EGEPI 127
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 129 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 173
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +1
Query: 748 REEXEEALNAVGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
RE+ EE+LN VGYDDI G K LA IKEMVELPL P+LF AIGV
Sbjct: 29 REDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 73
Score = 59.7 bits (138), Expect = 1e-08
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +2
Query: 665 FKVVETDPSPFCIVAPDTVIHCDGXPI 745
FKVVETDPSP+CIVAPDTVIHC+G PI
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPI 27
>L38810-1|AAC41735.1| 406|Homo sapiens thyroid receptor interactor
protein.
Length = 406
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ I G K + IKE++ELP+ P LF A+G+
Sbjct: 148 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
>D44467-1|BAA07919.1| 406|Homo sapiens 26S proteasome subunit p45
protein.
Length = 406
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ I G K + IKE++ELP+ P LF A+G+
Sbjct: 148 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
>BC002367-1|AAH02367.3| 406|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 5 protein.
Length = 406
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ I G K + IKE++ELP+ P LF A+G+
Sbjct: 148 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
>BC001932-1|AAH01932.1| 406|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 5 protein.
Length = 406
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ I G K + IKE++ELP+ P LF A+G+
Sbjct: 148 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
>AF035309-1|AAB88187.1| 280|Homo sapiens protein ( Homo sapiens
clone 23598 mRNA, complete cds. ).
Length = 280
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ I G K + IKE++ELP+ P LF A+G+
Sbjct: 22 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 54
>AB209036-1|BAD92273.1| 345|Homo sapiens proteasome 26S ATPase
subunit 5 variant protein.
Length = 345
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y+ I G K + IKE++ELP+ P LF A+G+
Sbjct: 144 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 176
>D78275-1|BAA11338.1| 389|Homo sapiens proteasome subunit p42
protein.
Length = 389
Score = 35.5 bits (78), Expect = 0.26
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y +I G + + ++E++ELPL P LF +G+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
>CR456709-1|CAG32990.1| 389|Homo sapiens PSMC6 protein.
Length = 389
Score = 35.5 bits (78), Expect = 0.26
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y +I G + + ++E++ELPL P LF +G+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
>BT006843-1|AAP35489.1| 389|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 6 protein.
Length = 389
Score = 35.5 bits (78), Expect = 0.26
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y +I G + + ++E++ELPL P LF +G+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
>BC005390-1|AAH05390.1| 389|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 6 protein.
Length = 389
Score = 35.5 bits (78), Expect = 0.26
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y +I G + + ++E++ELPL P LF +G+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
>AF006305-1|AAB61616.1| 389|Homo sapiens 26S proteasome regulatory
subunit protein.
Length = 389
Score = 35.5 bits (78), Expect = 0.26
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 778 VGYDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
V Y +I G + + ++E++ELPL P LF +G+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
>L02426-1|AAA35484.1| 440|Homo sapiens 26S protease (S4) regulatory
subunit protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>CR457044-1|CAG33325.1| 440|Homo sapiens PSMC1 protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>BT009826-1|AAP88828.1| 440|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 1 protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>BC073818-1|AAH73818.1| 440|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 1 protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>BC067741-1|AAH67741.1| 440|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 1 protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>BC016368-1|AAH16368.1| 440|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 1 protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>BC000512-1|AAH00512.1| 440|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 1 protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
>AK222668-1|BAD96388.1| 440|Homo sapiens proteasome 26S ATPase
subunit 1 variant protein.
Length = 440
Score = 31.9 bits (69), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 784 YDDIXGXXKXLAXIKEMVELPLXXPSLFXAIGV 882
Y DI G + IKE VELPL P + +G+
Sbjct: 184 YADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,703,208
Number of Sequences: 237096
Number of extensions: 2307709
Number of successful extensions: 4453
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4453
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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