Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A01
         (1519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.17 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.65 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   1.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   9.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   9.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   9.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 189  PPPPPPPP 196



 Score = 26.6 bits (56), Expect(2) = 0.17
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 190  PPPPPPPP 197



 Score = 24.2 bits (50), Expect(2) = 0.17
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 1102 PPPPPPPXXFXPP 1140
            P PPPPP    PP
Sbjct: 236  PAPPPPPPPTLPP 248


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 1102 PPPPPPPXXFXPP 1140
            PPPPPPP  F PP
Sbjct: 9    PPPPPPPPGFEPP 21



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 1098 PPPPPPPXXXFXPXXXPXPXXXG 1166
            PPPPPPP     P   P P   G
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect(2) = 0.65
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 843 PXTPPPXXEXXPXXXXRDSSXXXXXPPPPPPXXS 944
           P  PPP           + S     PPPPPP  S
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345



 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1099 PPPPPPP 1119
            PPPPPPP
Sbjct: 311  PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1098 PPPPPPP 1118
            PPPPPPP
Sbjct: 337  PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1102 PPPPPPP 1122
            PPPPPPP
Sbjct: 337  PPPPPPP 343



 Score = 22.2 bits (45), Expect(2) = 4.0
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +3

Query: 1101 PPPPPPXXXFXPXXXPXPXXXGXXIFXP 1184
            PPPPPP         P P      +  P
Sbjct: 361  PPPPPPRSAPSTGRQPPPLSSSRAVSNP 388



 Score = 21.4 bits (43), Expect(2) = 0.65
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 921 PPPPPXXSXP 950
           PPPPP  S P
Sbjct: 361 PPPPPPRSAP 370


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 813 VVXSPQPXXKPXTPPPXXEXXPXXXXRDSSXXXXXPPPPPP 935
           +V +P P   P  PP      P             PPPPPP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 761  PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 775  PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 776  PPPPPPPP 783



 Score = 24.2 bits (50), Expect(2) = 3.6
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 1056 PXXPXXXXXXXFXXPPPPPPP 1118
            P  P          PPPPPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPP 782



 Score = 21.8 bits (44), Expect(2) = 3.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 918 PPPPPPXXSXP 950
           PPPPPP    P
Sbjct: 732 PPPPPPAVIVP 742


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 370  PPPPPPPP 377



 Score = 24.2 bits (50), Expect(2) = 1.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 1089 FXXPPPPPPP 1118
            +  PPPPPPP
Sbjct: 368  YSPPPPPPPP 377



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 1098 PPPPPPPXXXFXPXXXP 1148
            PPPPPP      P   P
Sbjct: 372  PPPPPPELLNHSPKSRP 388


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 306  PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 307  PPPPPPPP 314


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 945  PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 946  PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,498
Number of Sequences: 5004
Number of extensions: 28694
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)