Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_A01
         (1519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.55 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.56 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   9.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 1099 PPPPPPPPXXFXP 1137
            P PPPPPP    P
Sbjct: 341  PAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect(2) = 0.55
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 918 PPPPPPXXSXP 950
           PPPPPP  S P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 20.6 bits (41), Expect(2) = 0.55
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 894 DSSXXXXXPPPPPPXXS 944
           DS       PPPPP  S
Sbjct: 334 DSDTPPKPAPPPPPPSS 350


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.56
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1098 PPPPPPP 1118
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1098 PPPPPPP 1118
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1099 PPPPPPPP 1122
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 561 GKGGGGGRXXXKRKGGXRXEXG 496
           GKG G G+   + +GG R   G
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,627
Number of Sequences: 438
Number of extensions: 6807
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53113500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)