Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P24
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    50   4e-07
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   1.3  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   5.3  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   7.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   7.0  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
 Frame = +2

Query: 191 KAQEGFPQTVVGALIGKQXGRNIEVMNXFELVXS---MXXXXXXXXXXYYXLKXEQFKQV 361
           ++ +G  + VVG L+G+  G  + V N + +                 +     E FK++
Sbjct: 33  RSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKI 92

Query: 362 FSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLNPAGRNGDQLPVVXYESVIDV 541
            ++   +GWY TG      D+ ++  +      PV+++++   ++   LP   Y ++ ++
Sbjct: 93  NANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVG-LPTNAYFAIDEI 151

Query: 542 VN--GRATMLLAPLTYTLAAEEAERIGVDHVAR 634
            +   +++     L  ++ AEEAE IGV+H+ R
Sbjct: 152 EDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLR 184


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 470 LMLNPAGRNGDQLPVVXYESVIDVVNGRATMLLAPLTYTLAAEE 601
           L+L+PA RN   LP++    +I ++   AT+LL      L+ EE
Sbjct: 4   LLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEE 47


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 582 YVKGARSIVARPLTTSITDSYXTTGN*SPFLPAGFNI 472
           YV+G+ S+   PL TS+ +SY         LP+GF++
Sbjct: 437 YVEGSGSMSTTPLATSVNNSYK--------LPSGFSV 465


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 494 FCLPDSTSTSQDTH*CHISVCELLCHVLREHLQLY 390
           FCLPD      D H C   +   + H+LR H  L+
Sbjct: 125 FCLPDQVYHLIDNHSC---IQTAVSHLLRNHQALF 156


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 618 TPILSASSAANVYVKGARSIVAR----PLTTSITDSYXTTGN*SPFLPAGFNI 472
           TP L+AS+A+      + S +A     P  T    S  T GN SP    GFN+
Sbjct: 268 TPSLAASTASTGSTDSSGSNIANTLIAPTPTISPPSANTVGNPSPADTPGFNV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,668
Number of Sequences: 5004
Number of extensions: 44242
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)