Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_P24
(974 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 104 1e-22
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 45 8e-05
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 31 1.8
10_08_0517 + 18482902-18482986,18483074-18483291,18483888-184840... 31 1.8
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796... 30 3.2
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 29 4.2
08_01_0486 + 4262065-4262346 29 5.6
10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744... 29 7.4
11_06_0701 + 26407055-26407597,26407794-26409644 28 9.8
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 104 bits (249), Expect = 1e-22
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 14/158 (8%)
Frame = +2
Query: 158 IMNVSEHWTRLKAQE-------------GFPQTVVGALIGKQXGRNIEVMNXFELVXSMX 298
I+NVS+H TR+KAQ G P V G +IG Q GR +E+ N FELV +
Sbjct: 36 IVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFELV--LD 93
Query: 299 XXXXXXXXXYYXLKXEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLML 478
+ K E +K+VF D LGWY+TG + D+ +H+ + DINE PV L+L
Sbjct: 94 PVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLL 153
Query: 479 NPA-GRNGDQLPVVXYESVIDVVNGRATMLLAPLTYTL 589
NPA + LPV YES + V++G ++ YT+
Sbjct: 154 NPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTI 191
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 45.2 bits (102), Expect = 8e-05
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 18/163 (11%)
Frame = +2
Query: 209 PQTVVGALIGKQXGRNIEVMNXFELVXSMXXXXXXXXXXYYXLKXEQFKQVFSDMDFLGW 388
P + G +IG Q GR +EV++ +++ + K E +K+ F + LGW
Sbjct: 89 PPRMYGCVIGVQRGRTVEVVDTSDIL--LDTDPGTLDRDLLKKKLETYKKAFPGLAILGW 146
Query: 389 YTTGDAPSERDIAVHRQ-----------------ICDINECPVMLMLNPA-GRNGDQLPV 514
Y+ + D+ ++ + D + L+ NPA + LPV
Sbjct: 147 YSIDTHVTNTDMETNQATVIWLSVWSYYEEMLLLLMDASGTTFYLLFNPAMNLSLKDLPV 206
Query: 515 VXYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARVSS 643
YE V ++ Y EAERI +DH V S
Sbjct: 207 TIYEKVHSTNRSPTPLIFVQGKYKTETVEAERISLDHTCPVVS 249
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 30.7 bits (66), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 343 GTIQTSVFXHGFPRMVYNWR 402
G + T VF HGFP + Y+WR
Sbjct: 50 GELGTVVFLHGFPEIWYSWR 69
>10_08_0517 +
18482902-18482986,18483074-18483291,18483888-18484049,
18484132-18484367,18484455-18484710
Length = 318
Score = 30.7 bits (66), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 343 GTIQTSVFXHGFPRMVYNWR 402
G + T VF HGFP + Y+WR
Sbjct: 29 GELGTVVFLHGFPEIWYSWR 48
>10_08_0516 +
18478743-18478830,18478940-18479319,18479406-18479641,
18480280-18480538
Length = 320
Score = 29.9 bits (64), Expect = 3.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 334 FEXGTIQTSVFXHGFPRMVYNWR 402
+E GT+ VF HGFP + Y+WR
Sbjct: 30 YELGTV---VFLHGFPEIWYSWR 49
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 343 GTIQTSVFXHGFPRMVYNWR 402
GT +F HGFP + Y+WR
Sbjct: 29 GTAPAVLFVHGFPELWYSWR 48
>08_01_0486 + 4262065-4262346
Length = 93
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 467 MLMLNPAGRNGDQLPVVXYESVIDVVNGRATMLLA 571
ML++ P+ +G QLP E+ VNGR+T+L A
Sbjct: 30 MLLVLPSPPSGRQLPSEEEEAAPCAVNGRSTILAA 64
>10_08_0515 -
18473545-18473791,18473921-18474156,18474299-18474460,
18474731-18474948,18475048-18475120
Length = 311
Score = 28.7 bits (61), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 343 GTIQTSVFXHGFPRMVYNWR 402
G T +F HGFP + Y+WR
Sbjct: 25 GEAATLLFVHGFPEVWYSWR 44
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 28.3 bits (60), Expect = 9.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 530 LIHTKLLVIDHHF--CLPDSTSTSQDTH*CHISVCELLCHVLREHLQLYTIRGNPCXKTL 357
LIH LL +D CLP+S ++ H+ C+ L + QLY +R +T
Sbjct: 448 LIHLHLLDLDRTCISCLPESIGALKNLQMLHLHRCKSLHSLPTAITQLYNLRRLDIVETP 507
Query: 356 V*IVP 342
+ VP
Sbjct: 508 INQVP 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,385
Number of Sequences: 37544
Number of extensions: 297360
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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